Method for Producing an L-Amino Acid

ABSTRACT

A method for producing an L-amino acid by preparing a processed product of a microalgae, which promotes production and accumulation of the L-amino acid by a bacterium having an ability to produce the L-amino acid, by culturing the microalgae in a medium, and processing the resulting culture at a midtemperature; culturing the bacterium in a medium containing the processed product of the microalgae to produce and accumulate the L-amino acid in culture; and collecting the L-amino acid from the culture.

This application is a Continuation of, and claims priority under 35U.S.C. §120 to, U.S. patent application Ser. No. 13/360,016, filed Jan.27, 2012, which was a Continuation of, and claimed priority under 35U.S.C. §120 to, International Application No. PCT/JP2010/062708, filedJul. 28, 2010, which claimed priority therethrough under 35 U.S.C. §119to Japanese Patent Application No. 2009-176518, filed Jul. 29, 2009, theentireties of which are incorporated by reference herein. Also, theSequence Listing filed electronically herewith is hereby incorporated byreference (File name: 2014-05-28T_US-473C_Seq_List; File size: 77 KB;Date recorded: May 28, 2014).

BACKGROUND OF THE INVENTION

1. Field of the Invention

The present invention relates to a method for producing an L-amino acidusing a microorganism. L-amino acids are used in various fields such asfor use in seasonings, food additives, feed additives, chemicals, anddrugs.

2. Brief Description of the Related Art

L-amino acids such as L-threonine and L-lysine are industrially producedby fermentation using amino acid-producing bacteria such as Escherichiabacteria. As these amino acid-producing bacteria, bacterial strainsisolated from nature, artificial mutants of those bacterial strains,recombinants of those bacterial strains in which L-amino acidbiosynthetic enzymes are enhanced by gene recombination, or the like,are used. Examples of the methods for producing L-threonine include, forexample, the methods described in Japanese Patent Laid-open (Kokai) No.5-304969, International Publication WO98/04715, Japanese PatentLaid-open No. 05-227977, and U.S. Patent Published Application No.2002/0110876. Examples of the methods for producing L-lysine include,for example, the methods described in Japanese Patent Laid-open No.10-165180, Japanese Patent Laid-open No. 11-192088, Japanese PatentLaid-open No. 2000-253879, and Japanese Patent Laid-open No.2001-057896.

In the industrial production of L-amino acids by fermentation,saccharides, i.e., glucose, fructose, sucrose, blackstrap molasses,starch hydrolysate, and so forth, are used as carbon sources. Frequentlyused in methods for producing an L-amino acid by fermentation as acarbon source are saccharification products of starches derived fromhigher plants such as corn and cassava. These have low moisture contentand high starch content, and therefore it is easy to industrially obtainstarches from them. On the other hand, although starches contained inmicroalgae are present at an amount per dry weight unit comparable tothat of corn or cassava, the dry weight of the algae per weight unit ofculture medium does not reach 1%. The process of separating alga bodies,dehydrating them, disrupting the cells, extracting starches, andpurifying the starches is complicated and difficult. Although ethanolfermentation using starches of microalgae is described in U.S. PatentPublished Application No. 2006/135308, U.S. Patent Published ApplicationNo. 2007/0202582, and Matsumoto, M. et al., 2003, Appl. Biochem.Biotechnol., 105-108:247-254, the results of the ethanol fermentationare not described. Further, any example of use of saccharified starchesof microalgae for amino acid production has not been shown so far.

It is known that Escherichia coli, which is a typical aminoacid-producing bacterium, can grow using glycerol as a sole carbonsource (Lin, E. C. C., 1996, pp. 307-342, In F. D. Neidhardt (ed.),Escherichia coli and Salmonella Cellular and Molecular Biology/SecondEdition, American Society for Microbiology Press, Washington, D.C.), andcan grow using long chain fatty acids having 12 or more carbon atoms asthe sole carbon source (Clark, D. P. and Cronan Jr., J. E., 1996, pp.343-357, In F. D. Neidhardt (ed.), Escherichia coli and SalmonellaCellular and Molecular Biology/Second Edition, American Society forMicrobiology Press, Washington, D.C.). Therefore, it is described inBrenner, D. J. and Farmer III J. J. (Family I., 2005, pp. 587-669, In:D. J. Brenner, N. R. Krieg and J. T. Staley, Editors, Bergey's Manual ofSystematic Bacteriology, Volume Two: The Proteobacteria Part B: TheGammaproteobacteria, Springer, New York), that Escherichia coli canassimilate both long chain fatty acids and glycerol, which are thehydrolysis products of fats and oils, but Escherichia coli does not havelipase activity, and therefore it cannot directly assimilate fats andoils. Furthermore, it is also known that solubility of long chain fattyacids is generally extremely low, and the measurement results of thesolubility are described in Vorum, H. et al., 1992, Biochimica etBiophysica Acta, 1126:135-142, i.e., although solubility of lauric acidis not lower than 0.1 g/L or more, solubility of oleic acid is nothigher than 0.0003 g/L, and that of palmitic acid is not higher than0.00000003 g/L. Therefore, it is difficult to simultaneously assimilatehighly water-soluble glycerol and fatty acids, and there has not beenreported to date L-amino acid production based on direct fermentationutilizing hydrolysates of fats and oils, which is a mixture of longchain fatty acids and glycerol, as a carbon source.

As for soybean and Elaeis guineensis (oil palm), which are oil plantsgenerally used for production of edible oil, beans or fruits thereofcontain about 20% of fats and oils. As for microalgae, there are knownmicroalgae producing fats or oils, and the yield of fats and oils perarea much exceeds that obtainable with the oil plants as reported inChisti Y., 2007, Biotechnol. Adv., 25:294-306. However, the process ofseparating algae, dehydrating them, disrupting the cells, extractingfats and oils and purifying them is complicated and difficult, as in thecase of starches. Therefore, there have so far been no reports aboutL-amino acid production based on direct fermentation utilizing fats andoils originating in algae.

Further, although methods for extracting organic substances derived fromchlorella have been reported (Japanese Patent Laid-open No. 9-75094,International Publication WO2006/095964, and U.S. Patent PublishedApplication No. 2007/0202582), it has been considered that disruption ispreferably performed by a high temperature reaction. Moreover, there hasso far been no report about production of L-amino acids by directfermentation utilizing a processed product obtained by theaforementioned methods as a carbon source. Furthermore, it has also beenknown that nucleic acid-related compounds can be increased by autolysisof chlorella (Japanese Patent Laid-open No. 62-278977), but there has sofar been no report about production of L-amino acids by directfermentation utilizing a processed product obtained by such a method asmentioned above as a carbon source.

SUMMARY OF THE INVENTION

An aspect of the present invention is to provide a more efficient methodfor producing an L-amino acid, especially a method for producing anL-amino acid at a lower cost by using a carbon source derived frommicroalgae as compared with conventional methods for producing anL-amino acid by fermentation using microorganisms, which are performedby using mainly saccharides derived from higher plants as the carbonsource.

The present invention demonstrates that L-amino acids can be efficientlyproduced by utilizing, as a carbon source, a processed product of aculture of a microalga obtained by reacting the culture at amidtemperature, from which organic substances can be obtained withoutadding lipase or amylase, or with adding a small amount of lipase oramylase. It is an aspect of the present invention to provide a methodfor producing an L-amino acid, which comprises:

preparing a processed product of a microalga, which promotes productionand accumulation of the L-amino acid by a bacterium having an ability toproduce the L-amino acid, by culturing the microalga in a first medium,and followed by processing at a midtemperature,

culturing the bacterium in a second medium comprising the processedproduct of the microalga to produce and accumulate the L-amino acid inthe second medium, and

collecting the L-amino acid from the second medium.

It is a further aspect of the present invention to provide a method asdescribed above, wherein said mid-temperature is 40° C. or higher.

It is a further aspect of the present invention to provide a method asdescribed above, wherein said mid-temperature is 70° C. or lower.

It is a further aspect of the present invention to provide a method asdescribed above, wherein the processed product comprises a) aprecipitate obtained by centrifugation of the product of the processingat a mid-temperature, and b) a fatty acid.

It is a further aspect of the present invention to provide a method asdescribed above, wherein the processed product comprises a) asupernatant obtained by centrifugation of the product of the processingat a mid-temperature, and b) glucose or glycerol.

It is a further aspect of the present invention to provide a method asdescribed above, wherein the processed product comprises an extractcomprising a fatty acid obtained by subjecting the product of theprocessing at a mid-temperature to a treatment with an alkali or anorganic solvent.

It is a further aspect of the present invention to provide a method asdescribed above, wherein the precipitate obtained by centrifuging theproduct of the processing at a mid-temperature is subjected to atreatment with an alkali or an organic solvent.

It is a further aspect of the present invention to provide a method asdescribed above, wherein the treatment with an alkali is performed at apH of 10.5 or higher.

It is a further aspect of the present invention to provide a method asdescribed above, wherein the treatment with an alkali is performed at60° C. or higher.

It is a further aspect of the present invention to provide a method asdescribed above, wherein organic solvent is selected from the groupconsisting of methanol, ethanol, 2-propanol, acetone, butanol, pentanol,hexanol, heptanol, octanol, chloroform, methyl acetate, ethyl acetate,dimethyl ether, diethyl ether, and hexane.

It is a further aspect of the present invention to provide a method asdescribed above, wherein temperature is lowered during the processing ata mid-temperature.

It is a further aspect of the present invention to provide a method asdescribed above, wherein the microalga is an alga belonging to thedivision Chlorophyta or Heterokontophyta.

It is a further aspect of the present invention to provide a method asdescribed above, wherein the microalga is an alga belonging to the classChlorophyceae, Trebouxiophyceae, or Bacillariophyceae.

It is a further aspect of the present invention to provide a method asdescribed above, wherein the microalga is an alga belonging to the classChlorophyceae.

It is a further aspect of the present invention to provide a method asdescribed above, wherein the bacterium is a bacterium belonging to thefamily Enterobacteriaceae or a coryneform bacterium.

It is a further aspect of the present invention to provide a method asdescribed above, wherein the bacterium belonging to the familyEnterobacteriaceae is Escherichia coli.

By utilizing the present invention, L-amino acids can be efficientlyproduced.

BRIEF DESCRIPTION OF THE DRAWINGS

FIG. 1 shows the amount of fatty acids obtained by processing Chorellakessleri at a mid-temperature.

FIG. 2 shows the amount of fatty acids obtained by processingNannochloris sp. at a mid-temperature.

FIG. 3 shows the time course of the fatty acid generation ratio during aprocessing of an alga at a mid-temperature.

FIG. 4 shows the results of examination of the pH conditions for analkali treatment for extracting fatty acids.

FIG. 5 shows the results of examination of the temperature conditionsfor an alkali treatment for extracting fatty acids.

FIG. 6 shows the results of examination of time for an alkali treatmentfor extracting fatty acids.

FIG. 7 shows the results of examination of the temperature conditionsfor first step of a two-step processing of algae at a mid-temperature.

FIG. 8 shows the results of examination of time for first step and timefor second step of a two-step processing of algae at a mid-temperature.

FIG. 9 shows the results of examination of the solvent used for anorganic solvent treatment for extracting fatty acids.

DESCRIPTION OF THE PREFERRED EMBODIMENTS

Hereafter, the present invention will be explained in detail.

<1> Microalgae and Culture Method Therefor

As the microalga used in the present invention, any algae can be used.However, microalgae which accumulates starches and/or fats and oils inalga bodies are particular examples.

Algae can refer to all the organisms performing oxygen generating typephotosynthesis except for Bryophyta, Pteridophyta and Spermatophyta,which live mainly on the ground. Algae can include various unicellularorganisms and multicellular organisms such as cyanobacteria (blue-greenalgae), which are prokaryotes, as well as those classified into thephylum Glaucophyta, Rhodophyta (red algae), Chlorophyta, Cryptophyta(crypt algae), Haptophyta (haptophytes), Heterokontophyta, Dinophyta(dinoflagellates), Euglenophyta, or Chlorarachniophyta, which areeukaryotes. Microalgae can refer to algae having a microscopic structureamong these algae except for marine algae, which are multicellularorganisms (Biodiversity Series (3) Diversity and Pedigree of Algae,edited by Mitsuo Chihara, Shokabo Publishing Co., Ltd. (1999)).

Many plants, including algae, produce starches as storagepolysaccharides (Ball, S. G. and Morell, M. K., 2003, Annual Review ofPlant Biology, 54:207-233). Many algae which accumulate starches areknown, and typical algae include those of the class Prasinophyceae,Chlorophyceae, Trebouxiophyceae, Ulvophyceae, Charophyceae, or the like,which all belong to the phylum Chlorophyta. Among these, algae belongingto the class Chlorophyceae or Trebouxiophyceae have been well studied.Examples of algae belonging to the class Chlorophyceae include those ofthe genus Chlamydomonas, and examples of algae belonging to the classTrebouxiophyceae include those of the genus Chlorella. Specifically,examples of algae belonging to the genus Chlamydomonas includeChlamydomonas reinhardtii (Ball, S. G., 1998, The Molecular Biology ofChloroplasts and Mitochondria in Chlamydomonas, pp. 549-567, RochaixJ.-D., Goldschmidt-Clermont M., and Merchant S. (Eds), Kluwer AcademicPublishers), and examples of algae belonging to the genus Chlorellainclude Chlorella kessleri (formerly Chlorella vulgaris, Izumo A. et al,2007, Plant Science, 172:1138-1147). More specifically, examples ofChlamydomonas reinhardtii include the Chlamydomonas reinhardtii CC125strain, and examples of Chlorella kessleri include the Chlorellakessleri 11h strain. These strains are stored at, for example, TheUniversity of Texas at Austin, The Culture Collection of Algae (UTEX) (1University Station A6700, Austin, Tex. 78712-0183, USA) with accessionnumbers of UTEX 2244 and UTEX 263, respectively, and can be obtainedfrom UTEX. The Chlorella kessleri 11h strain was stored at theindependent administrative agency, the IAM Culture Collection, Instituteof Molecular and Cellular Biosciences, The University of Tokyo with astorage number of C-531, and then transferred to the Microbial CultureCollection at the National Institute for Environmental Studies (NIES).Further, this strain is stored at the American Type Culture Collection(ATCC, P.O. Box 1549, Manassas, Va. 20108, 1, United States of America)under an accession number of ATCC 11468, and can also be obtained fromATCC.

It is further known that microalgae include those that accumulate fatsand oils as storage substances (Chisti Y., 2007, Biotechnol. Adv.,25:294-306). As such algae, those belonging to the phylum Chlorophyta orHeterokontophyta are well known. Examples of the algae belonging to thephylum Chlorophyta include those belonging to the class Chlorophyceae,and examples of algae belonging to the class Chlorophyceae includeNeochloris oleoabundans (Tornabene, T. G. et al., 1983, Enzyme andMicrob. Technol., 5:435-440), Nannochloris sp. (Takagi, M. et al., 2000,Appl. Microbiol. Biotechnol., 54:112-117) and so forth. In the phylumHeterokontophyta, the classes Chrysophyceae, Dictyochophyceae,Pelagophyceae, Rhaphidophyceae, Bacillariophyceae, Phaeophyceae,Xanthophyceae, and Eustigmatophyceae are classified. Examples offrequently used algae belonging to the class Bacillariophyceae includeThalassiosira pseudonana (Tonon, T. et al., 2002, Phytochemistry,61:15-24). Specific examples of Neochloris oleoabundans include theNeochloris oleoabundans UTEX 1185 strain, specific examples ofNannochloris sp. include the Nannochloris sp. UTEX LB 1999 strain, andspecific examples of Thalassiosira pseudonana include the Thalassiosirapseudonana UTEX LB FD2 strain. These strains can be obtained from theUniversity of Texas at Austin, The Culture Collection of Algae (UTEX), 1University Station A6700, Austin, Tex. 78712-0183, USA.

There is much information about culturing microalgae, and those of thegenus Chlorella or Arthrospira (Spirulina), Dunaliella salina and soforth are industrially cultured on a large scale (Spolaore, P. et al.,2006, J. Biosci. Bioeng., 101:87-96). For Chlamydomonas reinhardtii, forexample, the 0.3×HSM medium (Oyama Y. et al., 2006, Planta, 224:646-654)can be used, and for Chlorella kessleri, the 0.2×Gamborg's medium (IzumoA. et al., 2007, Plant Science, 172:1138-1147) and so forth can be used.Neochloris oleoabundans and Nannochloris sp. can be cultured by usingthe modified NORO medium (Yamaberi, K. et al., 1998, J. Mar.Biotechnol., 6:44-48; Takagi, M. et al., 2000, Appl. Microbiol.Biotechnol., 54:112-117) or the Bold's basal medium (Tornabene, T. G. etal., 1983, Enzyme and Microb. Technol., 5:435-440; Archibald, P. A. andBold, H. C., 1970, Phytomorphology, 20:383-389). For Thalassiosirapseudonana as an alga belonging to the class Bacillariophyceae, the F/2medium (Lie, C.-P. and Lin, L.-P., 2001, Bot. Bull. Acad. Sin.,42:207-214) and so forth can be used. Further, a photobioreactor canalso be used for culturing microalgae (WO2003/094598).

The culture is performed by adding 1 to 50% of precultured cellsuspension based on the volume of the main culture in many cases.Initial pH can be around neutral, i.e., 7 to 9, and the pH is notadjusted during the culture in many cases. However, the pH may beadjusted if needed. The culture temperature can be 25 to 35° C., and inparticular, a temperature around 28° C. is generally frequently used.However, the culture temperature may be a temperature suitable for thechosen alga. Air is blown into the culture medium in many cases, and asan aeration rate, an aeration volume per unit volume of culture mediumper minute of 0.1 to 2 vvm (volume per volume per minute) is frequentlyused. Further, CO₂ may also be blown into the medium in order to promotegrowth, and it can be blown at about 0.5 to 5% of the aeration rate.Although optimum illumination intensity of light also differs dependingon type of microalgae, an illumination intensity of about 1,000 to10,000 lux is frequently used. As the light source, it is common to usea white fluorescent lamp indoors, but the light source is not limited toit. It is also possible to perform the culture outdoors with sunlight.The culture medium may be stirred at an appropriate intensity, orcirculated, if needed. Further, it is known that algae accumulate fatsand oils in alga bodies when the nitrogen source is depleted (ThompsonG. A. Jr., 1996, Biochim. Biophys. Acta, 1302:17-45), and a medium of alimited nitrogen source concentration can also be used for the mainculture.

The culture of microalga can include a culture medium containing algabodies, and alga bodies which have been collected from a culture medium.

Alga bodies can be collected from a culture medium by typicaltechniques, such as centrifugation, filtration, gravitationalprecipitation using a flocculant, or the like (Grima, E. M. et al.,2003, Biotechnol. Advances, 20:491-515).

When fatty acids present in the processed product are used as the carbonsource, the microalga can be concentrated by centrifugation or the likebefore the processing at a mid-temperature. The concentration of thealga bodies includes obtaining a concentration of dry weight of themicroalga per unit volume of solution of 25 g/L or higher, or 250 g/L orhigher by the removal of solution components (including separating algabodies from a culture medium by centrifugation or the like andsuspending the alga bodies in a liquid at a desired concentration), andusing alga bodies precipitated and separated from the medium.

<2> Method for Processing Microalga and Obtaining the Processed Productof Microalga

The culture of a microalga can be processed at a mid-temperature, andthe processed product of the microalga can be used as a nutrient sourcefor L-amino acid fermentation.

The processed product of microalga can mean a reaction mixture obtainedby processing the culture of the microalga at a mid-temperature.Therefore, the terms “to process at a mid-temperature” and “to react ata mid-temperature” have the same meaning. The processed product caninclude one obtained by further subjecting the reaction mixtureprocessed at a mid-temperature to extraction or fractionation, and/oranother treatment, which contains a mixture of organic substancesoriginating in the cells of the microalga, and promotes production andaccumulation of an L-amino acid by a bacterium having an ability toproduce the L-amino acid.

The expression “to promote production and accumulation of an L-aminoacid” means that the mixture of organic substances derived fromdisrupted cells of microalga contained in the processed productsubstantially contributes to proliferation of a bacterium and L-aminoacid production as a supply source of carbon constituting cellcomponents and L-amino acids. Any processed products which cancontribute in such a manner as described above can be included in the“processed product which promotes production and accumulation of anL-amino acid”.

Whether a processed product promotes production and accumulation of anL-amino acid can be confirmed by culturing the bacterium under the sameconditions in the presence and absence of the processed product, andcomparing production and accumulation amounts of the L-amino acid inculture.

Although the L-amino acid accumulation may be improved in any degree ascompared with L-amino acid accumulation observed without addition of theprocessed product, the L-amino acid accumulation can be improved by 10%or more, 20% or more, or even 30% or more, as compared with the culturenot containing the processed product.

Improvement of growth rate of a microorganism and increase of cellamount of a microorganism in a culture medium by the addition of theprocessed product are also included in the results of “to promoteproduction and accumulation of an L-amino acid”, and the growth rate andcell amount can be increased by 10% or more, 20% or more, or even 30% ormore, as compared with the culture not containing the processed product.

Further, when the processed product contains a carbon source, if it cansubstantially contribute to growth of a bacterium and L-amino acidproduction as a supply source of carbon constituting cell components andL-amino acids, it can be included in the processed product whichpromotes production and accumulation of an L-amino acid. Therefore,although any processed product which increases L-amino acid productionand accumulation amounts, as compared with when the processed product isnot added, can be a processed product, a processed product whichimproves L-amino acid production and accumulation amounts as comparedwith when a carbon source comprising purified substances is added in thesame amount as the carbon source contained in the processed product isone particular example.

Further, if the processing steps for purifying the carbon source isshortened as compared with that for using a carbon source consisting ofpurified substances, it can be said that L-amino acid production andaccumulation are improved. In this case, the time of the processingsteps can be shortened by 10% or more, 20% or more, or even 30% or more.

The midtemperature can mean a temperature sufficient for increasing theamount of fatty acids, glycerol or glucose in the processed product, andthe processing may be continuously performed at the same temperature, orthe temperature maybe lowered in the middle of the processing. As anexample of lowering the temperature in the middle of the processing, theprocessing may be performed once at a midtemperature as a first step,and then performed at a constant midtemperature which is lower than thefirst step temperature as a second step. The continuous processing at amidtemperature, or the first step midtemperature processing, can beperformed usually at 40° C. or higher, 45° C. or higher, or even 50° C.or higher, as for the minimum temperature, and usually at 70° C. orlower, 65° C. or lower, or even 60° C. or lower, as for the maximumtemperature. The second step can be performed usually at 30° C. orhigher, 35° C. or higher, or even 40° C. or higher, as for the minimumtemperature, and usually at 55° C. or lower, 50° C. or lower, or even45° C. or lower, as for the maximum temperature.

Although the culture of the alga obtained by the aforementionedculturing method per se may be subjected to the reaction at amidtemperature, it may be concentrated as described above and then used.For example, the culture may be once centrifuged, and the precipitatedalga bodies may be used for the reaction.

Moreover, before the reaction at a midtemperature, the pH for thereaction may be adjusted to be weakly acidic, or the alga bodies may beonce frozen.

The weakly acidic pH mentioned above can be 3.0 to 7.0, or 4.0 to 6.0.

The temperature for freezing usually can mean a temperature of from −80to 0° C., and the reaction can be conducted at −20° C. or lower, or −50°C. or lower, for 1 hour or more.

For the continuous processing at a mid-temperature, the reaction can beperformed for at least 1 hour or more, or even 5 hours or more. Thereaction at a mid-temperature is usually performed for 48 hours or less,or 24 hours or less. For the first step mid-temperature processing, thereaction can be performed for at least 1 minute or more, 10 minutes ormore, or even 20 minutes or more. The first step mid-temperatureprocessing can be performed for 120 minutes or less, or 60 minutes orless. The second step mid-temperature processing can be performed for atleast 1 hour or more, 4 hours or more, as for the minimum reaction time,and can be performed for 20 hours or less, or 15 hours or less, as forthe maximum reaction time.

When an alkali treatment or organic solvent treatment is performed afterthe processing at a mid-temperature, the solution processed at amid-temperature as it is having the same volume may be subjected to thetreatment, the solution may be subjected to the treatment afterdilution, or a precipitate separated from the supernatant may besubjected to the treatment. The treatment can be performed at aconcentration of precipitate per unit volume of the solution of 250 g/Lor lower, or 125 g/L or lower. In the case of the alkali treatment, itcan be performed at a concentration of 125 g/L or lower, and in the caseof the organic solvent treatment, the precipitates can be separated fromthe supernatant.

The pH for the alkali treatment performed after the processing at amid-temperature can be 10.5 or higher and 14 or lower, or 11.5 orhigher, or even 12.5 or higher.

The temperature of the alkali treatment can be 60° C. or higher, 80° C.or higher, or even 90° C. or higher. The temperature of the alkalitreatment can be 120° C. or lower.

The time of the alkali treatment can be at least 10 minutes or more, 30minutes or more, or even 60 minutes or more. Time of the alkalitreatment can be 150 minutes or less.

The processed product obtained by the processing at a mid-temperaturemay be subjected to the organic solvent treatment for extraction afterdrying, or may be extracted without drying. Examples of the organicsolvent mentioned above include methanol, ethanol, 2-propanol, acetone,butanol, pentanol, hexanol, heptanol, octanol, chloroform, methylacetate, ethyl acetate, dimethyl ether, diethyl ether, hexane, and soforth.

After the processing at a mid-temperature, the reaction mixture can beseparated into precipitate and supernatant by centrifugation. Moreover,after the processing at a mid-temperature, the processed product per secan be used as a medium component for L-amino acid fermentation.

The precipitate can contain much fatty acids, and they can be subjectedto an alkali treatment in order to form micelles of the fatty acids inwater. Further, in order to obtain more efficient assimilation as thecarbon source, the precipitate can be subjected to an emulsificationtreatment. Examples of the emulsification treatment can include additionof an emulsification enhancer, stirring, homogenization,ultrasonication, and so forth. It is considered that the emulsificationtreatment makes it easier for the bacteria to assimilate fatty acids,and L-amino acid fermentation becomes more effective. The emulsificationtreatment can be of any type, so long as it makes it easier for bacteriahaving an L-amino acid-producing ability to assimilate fatty acids. Asthe emulsification method, for example, addition of an emulsificationenhancer or a surfactant etc. can be contemplated. Examples ofemulsification enhancer can include phospholipids and sterols. Examplesof the surfactant include, as nonionic surfactants, polyoxyethylenesorbitan fatty acid esters such as poly(oxyethylene) sorbitan monooleicacid ester (Tween 80), alkyl glucosides such as n-octyl β-D-glucoside,sucrose fatty acid esters such as sucrose stearate, polyglyceryl fattyacid esters such as polyglycerin stearic acid ester, and so forth.Examples of the surfactant can include, as ampholytic surfactants,N,N-dimethyl-N-dodecylglycine betaine, which is an alkylbetaine, and soforth. Besides these, surfactants generally used in the field of biologysuch as Triton X-100, polyoxyethylene(20) cetyl ether (Brij-58) andnonylphenol ethoxlate (Tergitol NP-40) can be used.

Furthermore, an operation for promoting emulsification andhomogenization of hardly soluble substances, i.e., fatty acids, is alsoeffective. This operation may be any operation which promotesemulsification and homogenization of a mixture of a fatty acid andglycerol. Specific examples include stirring, homogenizer treatment,homomixer treatment, ultrasonication, high pressure treatment, hightemperature treatment, and so forth, and stirring, homogenizertreatment, ultrasonication, and a combinations of these are particularexamples.

The treatment can be used with the aforementioned emulsificationenhancer and stirring, homogenizer treatment and/or ultrasonication incombination, and these treatments can be carried out under alkalineconditions, under which fatty acids are more stable. As the alkalinecondition, pH of 9 or higher can be used, and pH of 11 or higher isanother example.

When the precipitate contains fats and oils produced by microalgae, ahydrolysate thereof can also be added to the medium as a carbon source.A mixed solution of organic substances extracted with a solvent such asethanol, a mixture of methanol and chloroform or acetone can also besubjected to hydrolysis. These solutions can be used as they are, orthey can also be concentrated by a processing such as lyophilization andevaporation. This solution contains components that can be used as anorganic nitrogen source such as amino acids and components effective forgrowth of bacteria having an amino acid-producing ability such asmetals, and can also be used as a medium component other than the carbonsource.

Fats and oils are esters formed from fatty acids and glycerol, and arealso called triglycerides. Fats and oils produced by microalgae can befatty acid species generated by hydrolysis which can be utilized by achosen bacterium as a carbon source, and higher contents thereof can beused. Examples of long chain fatty acid species assimilable by bacteriahaving an L-amino acid-producing ability include lauric acid, myristicacid, palmitic acid, stearic acid, oleic acid, and so forth. Further,besides fats and oils, organisms generally contain lipids, which releasefatty acids by hydrolysis, and fatty acids produced by hydrolysis oflipids can also be used as a carbon source. Examples of the lipidinclude waxes and ceramides, which are simple lipids, as well asphospholipids and glycolipids, which are complex lipids, and so forth.

In order to further hydrolyze fats and oils, the precipitate may bereacted with a lipase. Lipases are enzymes that hydrolyze fat or oilinto fatty acids and glycerol, and are also called triacylglycerollipases, or triacylglyceride lipases.

Lipases are found in various organisms, and lipases derived from anyspecies may be used so long as a lipase which catalyzes theaforementioned reaction is used. In recent years, various attempts havealso been made to produce biodiesel fuel, which is fatty acid esters,from fat or oil and an alcohol by using a lipase enzyme (Fukuda, H.,Kondo, A., and Noda, H., 2001, J. Biosci. Bioeng., 92, 405-416).

As typical lipases derived from microorganisms, many lipases derivedfrom those of the genus Bacillus, Burkholderia, Pseudomonas orStaphylococcus are known (Jaeger, K. E., and Eggert, T., 2002, Curr.Opin. Biotechnol., 13:390-397).

As examples, the nucleotide sequence of the gene coding for LipA derivedfrom Bacillus subtilis (GenBank Accession No. M74010) and the amino acidsequence thereof are shown in SEQ ID NOS: 1 and 2, respectively.

The nucleotide sequence of the gene coding for LipA derived fromBurkholderia glumae (GenBank Accession No. X70354) and the amino acidsequence thereof are shown in SEQ ID NOS: 3 and 4, respectively.

The nucleotide sequence of the gene coding for LipA derived fromPseudomonas aeruginosa (GenBank Accession No. D50587) and the amino acidsequence thereof are shown in SEQ ID NOS: 5 and 6, respectively.

The nucleotide sequence of the lipase derived from Staphylococcus aureus(GenBank Accession No. M12715) and the amino acid sequence thereof areshown in SEQ ID NOS: 7 and 8, respectively.

The lipase derived from the yeast Candida antarctica (GenBank AccessionNo. Z30645) is also one of the lipases which can be used (Breivik, H.,Haraldsson, G. G., and Kristinsson, B., 1997, J. Am. Oil Chem. Soc., 74,1425-1429). The nucleotide sequence of the gene coding for this lipaseand the amino acid sequence thereof are shown in SEQ ID NOS: 9 and 10,respectively.

Furthermore, as for the yeast, of five or more kinds of lipases encodedby separate genes are known to be present in Candida rugosa (Candidacylindracea) (Alberghina, L. and Lotti, M., 1997, Methods Enzymol.,284:246-260). As major lipases, LIP1 and LIP2 are known, and thenucleotide sequence of the lip1 gene (GenBank Accession No. X64703)coding for LIP1 and the amino acid sequence thereof are shown in SEQ IDNOS: 11 and 12, respectively. The nucleotide sequence of the lip2 gene(GenBank Accession No. X64703) coding for LIP2 and the amino acidsequence thereof are shown in SEQ ID NOS: 13 and 14, respectively. Inaddition, it is known that, in yeasts of the genus Candida such asCandida cylindracea, the CTG codon, which codes for leucine according tothe universal codes, codes for serine (Kawaguchi, Y. et al., 1989,Nature, 341:164-166; Ohama, T. et al., 1993, Nucleic Acids Res.,21:4039-4045). In SEQ ID NOS: 11 to 14, although the amino acidscorresponding to CTG are indicated as Leu for convenience, they areactually Ser.

Furthermore, lipases derived from Cryptococcus bacteria, for example,the lipase produced by Cryptococcus sp. S-2, and lipases having aprimary structure similar to those of the foregoing lipases may also beused (Japanese Patent Laid-open No. 2004-73123). As a gene coding for alipase derived from a Cryptococcus bacterium, the lipase gene CS2 ofCryptococcus sp. S-2 (FERM P-15155) is known (Japanese Patent Laid-openNo. 2004-73123). The nucleotide sequence of this CS2 gene is shown inSEQ ID NO: 18, and the amino acid sequence of the precursor of thelipase encoded by this CS2 gene is shown in SEQ ID NO: 19. It isexpected that, in the amino acid sequence of SEQ ID NO: 2, the sequenceof the −34 to −1 positions is a signal peptide, and the sequence of the1 to 205 positions corresponds to the mature protein. Cryptococcus sp.S-2 was deposited on Sep. 5, 1995 at the National Institute ofBioscience and Human-Technology, Agency of Industrial Science andTechnology (presently, the independent administrative agency, theInternational Patent Organism Depository, National Institute of AdvancedIndustrial Science and Technology (Central 6, 1-1, Higashi 1-Chome,Tsukuba-shi, Ibaraki-ken, 305-8566, Japan)), and assigned an accessionnumber of FERM P-15155. The deposit was converted to an internationaldeposit based on the Budapest Treaty on Apr. 25, 2008, and assigned anaccession number of FERM BP-10961.

As the aforementioned lipases, those prepared from cells or culture ofthe aforementioned microorganisms can be used, or they may be preparedby expressing a gene coding for each lipase in another hostmicroorganism using genetic engineering techniques. When a gene derivedfrom yeast in which CTG codon codes for serine, such as Candida rugosa(Candida cylindracea), is expressed in another host, it is necessary tochange CTG into another universal codon coding for serine(Schmidt-Dannert, C., 1999, Bioorg. Med. Chem., 7:2123-2130).

Examples of the characteristics of sequences of lipases include thepresence of the GXSXG motif called a lipase box near Ser of the activecenter, and conservation of three residues of Ser, Asp and His calledthe catalytic triad, which are common to lipases, esterases and serineproteases. For example, in the amino acid sequence of LipA derived fromBacillus subtilis shown in SEQ ID NO: 2, the lipase box corresponds tothe positions 106 to 110, and the catalytic triad corresponds to thethree residues: Ser at the position 108, Asp at the position 164, andHis at the position 187.

Furthermore, in order to reduce the cost for the enzyme, a lipasemodified so that the activity and stability thereof are improved mayalso be used. Examples include the lipase A of Bacillus subtilismodified by the phage display method (Droge et al., ChemBioChem, 2006,7:149-157), a modified lipase of which activity and stability areimproved by DNA shuffling (Suen et al., Protein Eng. Design & Selection,2004, 17:133-140), the C. antactica lipase B modified by the CALB method(Zhang et al., Protein Eng., 2003, 16:599-605), the Pseudomonasaeruginosa lipase modified by the CAST method (Reets et al., Angew.Chem. Int. Ed., 2005, 44:4192-4196), and so forth.

If fats and oils in the precipitate obtained by centrifugation of theprocessed product obtained by the reaction at a midtemperature aredecomposed, they decompose into fatty acids and glycerol. Therefore,glycerol may be used as a carbon source for the amino acid fermentation.

The supernatant obtained by centrifugation of the processed productobtained by the reaction at a midtemperature may also be used as theprocessed product. The supernatant obtained by centrifugation of theprocessed product contains fragments of starches and glucose as well asglycerol, which are produced through decomposition of starches and oilsand fats, respectively, by the processing at a mid-temperature accordingto the present invention. Therefore, glucose and glycerol may be used asthe carbon source.

The supernatant obtained by centrifugation of the processed productobtained the reaction at a moderate temperature contains fragments ofstarches. Therefore, a processed product obtained by saccharifying thefragments of starches in the supernatant with an amyloglucosidase or thelike to further increase the glucose amount may also be used.

Starches are high molecular weight polysaccharides made up of amylose,which includes glucose residues linearly linked by α-1,4-glycosidelinkages and amylopectin, which includes glucose residues linearlylinked by α-1,4-glycoside linkages and branching by α-1,6-glycosidelinkages. Amylase is a generic name for enzymes that hydrolyze glycosidelinkages of starches etc. Because of a difference in the action site,they are roughly classified into α-amylase (EC 3.2.1.1), β-amylase (EC3.2.1.2), and glucoamylase (EC 3.2.1.3) or amyloglucosidase(amylo-alpha-1,6-glucosidase, EC: HYPERLINKwww.genome.jp/dbget-bin/www#bget?3.2.1.33″ 3.2.1.33. α-Amylase is anendo-type enzyme which randomly cleaves α-1,4-glycoside linkages ofstarches, glycogen, and so forth. β-Amylase is an exo-type enzyme whichcleaves α-1,4-glycoside linkage to excise a maltose unit one by one fromthe non-reducing end of starches. The glucoamylase or amyloglucosidaseis an exo-type enzyme which cleaves α-1,4-glycoside linkages to excise aglucose unit one by one from the non-reducing end of starches, and alsocleaves α-1,6-glycoside linkages contained in amylopectin. In order todirectly produce glucose from starches, glucoamylase or amyloglucosidaseis widely used for the production of glucose.

There are many examples of saccharification reactions of starchesderived from grains, which can also be industrially implemented(Robertson, G. H. et al., 2006, J. Agric. Food Chem., 54:353-365). Inthe same manner as these examples, a saccharification product can beobtained from alga bodies by an enzymatic reaction. When a solutioncontaining disrupted alga bodies is subjected to an enzyme treatment, apretreatment such as boiling, ultrasonication, an alkaline treatment,and so forth can be used in combination (Izumo A. et al., 2007, PlantScience, 172:1138-1147).

Conditions of the enzymatic reaction can be suitably determinedaccording to the characteristics of the chosen enzyme. For example, foramyloglucosidase (Sigma Aldrich, A-9228), an enzyme concentration of 2to 20 U/mL, a temperature of 40 to 60° C., and pH 4 to 6 are particularexamples. If an organic acid that can be assimilated by a bacterium usedfor the L-amino acid production is used for adjusting pH as a buffer,the organic acid can be used as a carbon source together with thesaccharification product of starches. For example, the enzyme reactionproduct as it is can be added to the medium.

<4> Bacteria Used in the Present Inventions

A bacterium having an L-amino acid-producing ability is used. Thebacterium is not particularly limited, so long as it can efficientlyproduce an L-amino acid from organic substances produced by microalgae,in particular, a saccharification product of starches or a hydrolysateof fat or oil. Examples of the bacterium include, for example, bacteriabelonging to the family Enterobacteriaceae such as those of the genusEscherichia, Pantoea, Enterobacter, and so forth, and so-calledcoryneform bacteria such as those belonging to the genus Brevibacterium,Corynebacterium, Microbacterium, or the like, but the bacterium is notlimited to these.

The L-amino acid-producing bacterium can be modified to increase anability to utilize hydrolysate of fats or oils or fatty acids. Examplesof such modification include, for example, deletion of the gene codingfor the transcription factor FadR having a DNA-binding ability forcontrolling the fatty acid metabolism observed in enterobacteria(DiRusso, C.C. et al., 1992, J. Biol. Chem., 267:8685-8691; DiRusso, C.C. et al., 1993, Mol. Microbiol., 7:311-322). Specifically, the fadRgene of Escherichia coli is a gene located at the nucleotide numbers1,234,161 to 1,234,880 of the genome sequence of Escherichia coli MG1655strain registered with Genbank Accession No. U00096, and coding for theprotein registered with GenBank accession No. AAC74271. The fadR genesequence of Escherichia coli is shown in SEQ ID NO: 16.

In order to enhance the ability to assimilate hydrolysates of fats andoils or fatty acids, expression amounts of one or more of genes selectedfrom fadA, fadB, fadI, fadJ, fadL, fadE and fadD can be increased.

The “fadL gene” can mean a gene encoding a transporter of the outermembrane having an ability to take up a long chain fatty acid, which isfound in the Enterobacteriaceae family bacteria (Kumar, G. B. and Black,P. N., 1993, J. Biol. Chem., 268:15469-15476; Stenberg, F. et al., 2005,J. Biol. Chem., 280:34409-34419). Specific examples of gene encodingFadL include the gene located at the nucleotide numbers 2459322 to2460668 of the Escherichia coli genomic sequence (Genbank Accession No.U00096) as the fadL gene of Escherichia coli.

The “fadD gene” can mean a gene coding for an enzyme having the fattyacyl-CoA synthetase activity, which generates fatty acyl-CoA from a longchain fatty acid and facilitates uptake through the inner membrane,which is found in the Enterobacteriaceae family bacteria (Dirusso, C. C.and Black, P. N., 2004, J. Biol. Chem., 279:49563-49566; Schmelter, T.et al., 2004, J. Biol. Chem., 279: 24163-24170). Specific examples ofthe gene encoding FadD include the gene located at the nucleotidenumbers 1887770 to 1886085 (complementary strand) of Escherichia coligenomic sequence (GenBank Accession No. U00096) as the fadD gene ofEscherichia coli.

The “fadE gene” can mean a gene encoding an enzyme having the acyl-CoAdehydrogenase activity, which oxidizes fatty acyl-CoA, and is found inthe Enterobacteriaceae family bacteria (O'Brien, W. J. and Frerman, F.E. 1977, J. Bacteriol., 132:532-540; Campbell, J. W. and Cronan, J. E.,2002, J. Bacteriol., 184:3759-3764).

Specific examples of the gene coding for FadE include the gene locatedat the nucleotide numbers 243303 to 240859 (complementary strand) ofEscherichia coli genomic sequence (GenBank Accession No. U00096) andhaving the nucleotide sequence shown in SEQ ID NO: 7 as the fadE gene ofEscherichia coli. The amino acid sequence encoded by this gene is shownin SEQ ID NO: 8.

The “fadB gene” can mean a gene coding for an enzyme which is the αcomponent of a fatty acid oxidation complex found in theEnterobacteriaceae family bacteria and has four different activities,that is, of enoyl-CoA hydratase, 3-hydroxyacyl-CoA dehydrogenase,3-hydroxyacyl-CoA epimerase and Δ3-cis-Δ2-trans-enoyl-CoA isomerase(Pramanik, A. et al., 1979, J. Bacteriol., 137:469-473; Yang, S. Y. andSchulz, H., 1983, J. Biol. Chem., 258:9780-9785). Specific examples ofthe gene coding for FadB include the gene located at the nucleotidenumbers 4028994 to 4026805 (complementary strand) of the Escherichiacoli genomic sequence (GenBank Accession No. U00096) as the fadB gene ofEscherichia coli.

The “fadA gene” referred to in the present invention means a gene codingfor an enzyme which is the β component of the fatty acid oxidationcomplex found in the Enterobacteriaceae family bacteria and shows the3-ketoacyl-CoA thiolase activity (Pramanik, A. et al., 1979, J.Bacteriol., 137: 469-473). Specific examples of the gene coding for FadAinclude the gene located at the nucleotide numbers 4026795 to 4025632(complementary strand) of the Escherichia coli genomic sequence (GenBankAccession No. U00096) as the fadA gene of Escherichia coli.

It is known that FadB and FadA form a complex in the fatty acidoxidation complex found in the Enterobacteriaceae family bacteria, andthe genes also form the fadBA operon (Yang, S. Y. et al., 1990, J. Biol.Chem., 265:10424-10429). Therefore, as the fadBA operon, the wholeoperon can also be amplified.

The ability to assimilate hydrolysates of fats and oils or fatty acidscan also be enhanced by enhancing the cyo operon (cyoABCDE). The“cyoABCDE” can mean a group of genes coding for the subunits of thecytochrome bo terminal oxidase complex as one of the terminal oxidasesfound in the Enterobacteriaceae family bacteria. The cyoB is a genecoding for the subunit I, cyoA is a gene encoding the subunit II, cyoCis a gene encoding the subunit III, cyoC is a gene encoding the subunitIV, and cyoE is a gene encoding an enzyme showing the heme 0 synthaseactivity (Gennis, R. B. and Stewart, V., 1996, pp. 217-261, In F. D.Neidhardt (ed.), Escherichia coli and Salmonella Cellular and MolecularBiology/Second Edition, American Society for Microbiology Press,Washington, D.C.; Chepuri et al., 1990, J. Biol. Chem.,265:11185-11192).

Specific examples of the gene coding for cyoA include the gene locatedat the nucleotide numbers 450834 to 449887 (complementary strand) of theEscherichia coli genomic sequence (GenBank Accession No. U00096) as thecyoA gene of Escherichia coli. Specific examples of gene coding for cyoBinclude the gene located at the nucleotide numbers 449865 to 447874(complementary strand) of Escherichia coli genomic sequence (GenBankAccession No. U00096) as the cyoB gene of Escherichia coli. Specificexamples of gene coding for cyoC include the gene located at thenucleotide numbers 447884 to 447270 (complementary strand) of theEscherichia coli genomic sequence (GenBank Accession No. U00096) as thecyoC gene of Escherichia coli. Specific examples of gene coding for cyoDinclude the gene located at the nucleotide numbers 447270 to 446941(complementary strand) of the Escherichia coli genomic sequence (GenBankAccession No. U00096) as cyoD gene of Escherichia coli. Specificexamples of gene coding for cyoE include the gene located at thenucleotide numbers 446929 to 446039 (complementary strand) of theEscherichia coli genomic sequence (GenBank Accession No. U00096) as thecyoE gene of Escherichia coli.

The bacterium can be modified so that the activity of pyruvate synthaseor pyruvate:NADP⁺ oxidoreductase is enhanced (refer to WO2009/031565).

The “pyruvate synthase” can mean an enzyme which can reversibly catalyzethe following reaction, which generates pyruvic acid from acetyl-CoA andCO₂ in the presence of an electron donor such as ferredoxin andflavodoxin (EC 1.2.7.1). Pyruvate synthase may be abbreviated as PS, andmay be designated pyruvate oxidoreductase, pyruvate ferredoxinoxidoreductase, pyruvate flavodoxin oxidoreductase, or pyruvateoxidoreductase. As the electron donor, ferredoxin or flavodoxin can beused.

Reduced ferredoxin+acetyl-CoA+CO₂−>oxidized ferredoxin+pyruvic acid+CoA

Enhancement of the pyruvate synthase activity can be confirmed bypreparing crude enzyme solutions from the microorganism before and afterthe enhancement, and comparing the pyruvate synthase activities. Theactivity of pyruvate synthase can be measured by, for example, themethod of Yoon et al. (Yoon, K. S. et al., 1997, Arch. Microbiol.167:275-279). For example, the measurement can be taken by addingpyruvic acid to a reaction mixture containing oxidized methylviologen asan electron acceptor, CoA, and a crude enzyme solution, andspectroscopically measuring the amount of reduced methylviologen, whichincreases due to the decarboxylation of pyruvic acid. One unit (U) ofthe enzymatic activity is defined as the activity of reducing 1 μmol ofmethylviologen per 1 minute. When the parent strain has the pyruvatesynthase activity, the activity desirably increases, for example, 1.5times or more, 2 times or more, or even 3 times or more, compared withthat of the parent strain. When the parent strain does not have thepyruvate synthase activity, although it is sufficient that pyruvatesynthase is produced by the introduction of the pyruvate synthase gene,the activity can be enhanced to such an extent that the enzymaticactivity can be measured, and the activity can be 0.001 U/mg (cellprotein) or higher, 0.005 U/mg or higher, or even 0.01 U/mg or higher.Pyruvate synthase is sensitive to oxygen, and activity expression andmeasurement are generally often difficult (Buckel, W. and Golding, B.T., 2006, Ann. Rev. of Microbiol., 60:27-49). Therefore, when theenzymatic activity is measured, the enzymatic reaction can be performedby reducing oxygen concentration in a reaction vessel.

As the gene encoding the pyruvate synthase, pyruvate synthase genes frombacteria having the reductive TCA cycle, such as the pyruvate synthasegenes of Chlorobium tepidum and Hydrogenobacter thermophilus, can beused. Moreover, pyruvate synthase genes from bacteria belonging to theEenterobacteriaceae family bacteria, including Escherichia coli, can beused. Furthermore, as the gene coding for pyruvate synthase, pyruvatesynthase genes of autotrophic methanogens such as Methanococcusmaripaludis, Methanocaldococcus jannaschii, and Methanothermobacterthermautotrophicus, can be used.

The “pyruvate:NADP⁺ oxidoreductase” can mean an enzyme reversiblycatalyzing the following reaction, which generates pyruvic acid fromacetyl CoA and CO₂, in the presence of an electron donor such as NADPHor NADH (EC 1.2.1.15). The pyruvate:NADP⁺ oxidoreductase may beabbreviated as PNO, and may also be called pyruvate dehydrogenase.However, the “pyruvate dehydrogenase activity” is the activity ofcatalyzing the oxidative decarboxylation of pyruvic acid to generateacetyl-CoA, as described later, and pyruvate dehydrogenase (PDH) whichcatalyzes this reaction is an enzyme different from pyruvate:NADP⁺oxidoreductase. Pyruvate:NADP⁺ oxidoreductase can use NADPH or NADH asthe electron donor.

NADPH+acetyl-CoA+CO₂−>NADP⁺+pyruvic acid+CoA

Enhancement of the pyruvate:NADP⁺ oxidoreductase activity can beconfirmed by preparing crude enzyme solutions from the microorganismbefore and after the enhancement, and comparing the pyruvate:NADP⁺oxidoreductase activities. The activity of pyruvate:NADP⁺ oxidoreductasecan be measured by, for example, the method of Inui et al. (Inui, H., etal., 1987, J. Biol. Chem., 262:9130-9135). For example, the measurementcan be attained by adding pyruvic acid to a reaction mixture containingoxidized methylviologen as an electron acceptor, CoA, and a crude enzymesolution, and spectroscopically measuring the amount of reducedmethylviologen, which increases due to the decarboxylation of pyruvicacid. One unit (U) of the enzymatic activity is defined as an activityof reducing 1 μmol of methylviologen per 1 minute. When the parentstrain has the pyruvate:NADP⁺ oxidoreductase activity, the activityincreases 1.5 times or more, 2 times or more, or even 3 times or more,compared with that of the parent strain. When the parent strain does nothave the pyruvate:NADP⁺ oxidoreductase activity, although it issufficient that pyruvate:NADP⁺ oxidoreductase is produced by theintroduction of the pyruvate:NADP⁺ oxidoreductase gene, the activity canbe enhanced to such an extent that the enzymatic activity can bemeasured, and the activity can be 0.001 U/mg (cell protein) or higher,0.005 U/mg or higher, or even 0.01 U/mg or higher. Pyruvate:NADP⁺oxidoreductase is sensitive to oxygen, and activity expression andmeasurement are generally often difficult (Inui, H., et al, 1987, J.Biol. Chem., 262: 9130-9135; Rotte, C. et al., 2001, Mol. Biol. Evol.,18:710-720).

As for the gene coding for pyruvate:NADP⁺ oxidoreductase, it is knownthat, besides the pyruvate:NADP⁺ oxidoreductase gene of Euglenagracilis, which is a photosynthetic eukaryotic microorganism and is alsoclassified into protozoans (Nakazawa, M. et al., 2000, FEBS Lett.,479:155-156), and the pyruvate:NADP⁺ oxidoreductase gene of a protist,Cryptosporidium parvum (Rotte, C. et al., 2001, Mol. Biol. Evol.,18:710-720), a homologous gene also exists in Bacillariophyta,Tharassiosira pseudonana (Ctrnacta, V. et al., 2006, J. Eukaryot.Microbiol., 53:225-231).

Specifically, the pyruvate:NADP⁺ oxidoreductase gene of Euglena graciliscan be used (GenBank Accession No. AB021127).

The microorganism can be modified so that the pyruvate synthase activityis increased so that the activity for recycling oxidized electron donorto reduced electron donor, which is required for the pyruvate synthaseactivity, increases compared with a parent strain, for example, awild-type strain or a non-modified strain. Examples of the activity forrecycling oxidized electron donor to reduced electron donor includeferredoxin NADP⁺ reductase activity. Further, the microorganism may bemodified so that the activity of pyruvate synthase is increased so thatpyruvate synthase activity increases, in addition to the enhancement ofthe electron donor recycling activity. The aforementioned parent straincan inherently have a gene coding for the electron donor recyclingactivity, or can be a strain which does not inherently have the electrondonor recycling activity, but this activity can be imparted byintroduction of a gene coding for the activity, so that the L-aminoacid-producing ability is improved.

The “ferredoxin NADP⁺ reductase” can mean an enzyme that reversiblycatalyzes the following reaction (EC 1.18.1.2).

Reduced ferredoxin+NADP⁺−>Oxidized ferredoxin+NADPH+H⁺

This reaction is a reversible reaction, and can generate the reducedferredoxin in the presence of NADPH and the oxidized ferredoxin.Ferredoxin can be replaced with flavodoxin, and the enzyme flavodoxinNADP⁺ reductase also has an equivalent function. The existence offerredoxin NADP⁺ reductase has been confirmed in a wide variety oforganisms ranging from microorganisms to higher organisms (refer toCarrillo, N. and Ceccarelli, E. A., 2003, Eur. J. Biochem.,270:1900-1915; Ceccarelli, E. A. et al., 2004, Biochim. Biophys. Acta.,1698:155-165), and some of the enzymes are also named ferredoxin NADP⁺oxidoreductase or NADPH-ferredoxin oxidoreductase.

Enhancement of the ferredoxin NADP⁺ reductase activity can be confirmedby preparing crude enzyme solutions from the microorganism before andafter the modification, and comparing the ferredoxin NADP⁺ reductaseactivities. The activity of ferredoxin NADP⁺ reductase can be measuredby, for example, the method of Blaschkowski et al. (Blaschkowski, H. P.et al., 1982, Eur. J. Biochem., 123:563-569). For example, the activitycan be measured by using ferredoxin as a substrate to spectroscopicallymeasure the decrease of the amount of NADPH. One unit (U) of theenzymatic activity is defined as the activity for oxidizing 1 μmol ofNADPH per 1 minute. When the parent strain has the ferredoxin NADP⁺reductase activity, and the activity of the parent strain issufficiently high, it is not necessary to enhance the activity. However,the enzymatic activity can be increased 1.5 times or more, 2 times ormore, or even 3 times or more, compared with that of the parent strain.

Genes encoding the ferredoxin NADP⁺ reductase are found in manybiological species, and any which have the activity in the objectiveL-amino acid-producing strain can be used. As for Escherichia coli, thefpr gene has been identified as the gene which enocodes flavodoxin NADP⁺reductase (Bianchi, V. et al., 1993, 175:1590-1595). Moreover, it isknown that, in Pseudomonas putida, an NADPH-putidaredoxin reductase geneand a putidaredoxin gene exist as an operon (Koga, H. et al., 1989, J.Biochem. (Tokyo), 106:831-836).

Examples of the flavodoxin NADP⁺ reductase gene of Escherichia coliinclude the fpr gene which is located at the nucleotide numbers 4111749to 4112495 (complementary strand) of the genomic sequence of theEscherichia coli K-12 strain (Genbank Accession No. U00096). Moreover, aferredoxin NADP+ reductase gene (Genbank Accession No. BAB99777) is alsofound at the nucleotide numbers 2526234 to 2527211 of the genomicsequence of Corynebacterium glutamicum (Genbank Accession No. BA00036).

The pyruvate synthase activity requires the presence of ferredoxin orflavodoxin as an electron donor. Therefore, the microorganism can bemodified so that the activity of pyruvate synthase is increased so thatthe production ability for ferredoxin or flavodoxin is improved.

Moreover, the microorganism may also be modified so that the productionability for ferredoxin or flavodoxin is improved, in addition to beingmodified so that pyruvate synthase activity or flavodoxin NADP⁺reductase and pyruvate synthase activities are enhanced.

The “ferredoxin” can refer to a protein containing nonheme iron atoms(Fe) and sulfur atoms, bound with an iron-sulfur cluster called 4Fe-4S,3Fe-4S or 2Fe-2S cluster, and functioning as a one-electron carrier. The“flavodoxin” can refer to a protein containing FMN(flavin-mononucleotide) as a prosthetic group and functioning as a one-or two-electron carrier. Ferredoxin and flavodoxin are described in thereference of McLean et al. (McLean K. J. et al., 2005, Biochem. Soc.Trans., 33:796-801).

The parent strains to be subjected to the modification may be strainswhich inherently have an endogenous gene encoding ferredoxin orflavodoxin. Alternatively, the parent strains may be strains which donot inherently have a gene encoding ferredoxin or flavodoxin, but whichcan be imparted with the activity by introduction of a ferredoxin orflavodoxin gene to show improved L-glutamic acid-producing ability.

Improvement of ferredoxin or flavodoxin-producing ability compared withthe parent strain such as a wild-type or non-modified strain can beconfirmed by, for example, SDS-PAGE, two-dimensional electrophoresis, orWestern blotting using antibodies (Sambrook, J. et al., 1989, MolecularCloning A Laboratory Manual/Second Edition, Cold Spring HarborLaboratory Press, New York). Degree of the increase of the productionamount is not particularly limited so long as it increases compared withthat of a wild-type strain or non-modified strain. However, it can beincreased, for example, 1.5 times or more, 2 times or more, or 3 timesor more, compared with that of a wild-type strain or non-modifiedstrain.

The activities of ferredoxin and flavodoxin can be measured by addingthem to an appropriate oxidation-reduction reaction system. For example,a method that includes reducing produced ferredoxin with ferredoxinNADP⁺ reductase and quantifying reduction of cytochrome C by theproduced reduced ferredoxin is disclosed by Boyer et al. (Boyer, M. E.et al., 2006, Biotechnol. Bioeng., 94:128-138). Furthermore, theactivity of flavodoxin can be measured by the same method usingflavodoxin NADP⁺ reductase.

Genes encoding ferredoxin or flavodoxin are widely distributed, and anyof those can be used so long as ferredoxin or flavodoxin encoded by thegenes can be utilized by pyruvate synthase and an electron donorrecycling system. For example, in Escherichia coli, the fdx gene encodesferredoxin which has a 2Fe-2S cluster (Ta, D. T. and Vickery, L. E.,1992, J. Biol. Chem., 267:11120-11125), and the yfhL gene encodesferredoxin which has a 4Fe-4S cluster. Furthermore, as the flavodoxingene, the fldA gene (Osborne C. et al., 1991, J. Bacteriol.,173:1729-1737) and the fldB gene (Gaudu, P. and Weiss, B., 2000, J.Bacteriol., 182:1788-1793) are known. In the genomic sequence ofCorynebacterium glutamicum (Genbank Accession No. BA00036), multipleferredoxin genes exist. For example, the fdx gene (Genbank Accession No.BAB97942) is located at the nucleotide numbers of 562643 to 562963, andthe fer gene is located at the nucleotide numbers of 1148953 to 1149270(Genbank Accession No. BAB98495). Furthermore, in Chlorobium tepidum,many ferredoxin genes exist, and ferredoxin I and ferredoxin II havebeen identified and are of the 4Fe-4S type, which serves as the electronacceptor of pyruvate synthase (Yoon, K. S. et al., 2001, J. Biol. Chem.,276:44027-44036). Ferredoxin or flavodoxin genes of bacteria having thereductive TCA cycle such as Hydrogenobacter thermophilus can also beused.

Specific examples of the ferredoxin gene of Escherichia coli include thefdx gene located at the nucleotide numbers of 2654770 to 2655105(complementary strand) of the genomic sequence of the Escherichia coliK-12 strain (Genbank Accession No. U00096), and the yfhL gene located atthe nucleotide numbers of 2697685 to 2697945 of the same.

In the L-amino acid-producing bacterium, one or more genes involved inglycerol metabolism may be modified.

As for genes involved in the glycerol metabolism, in order to enhanceglycerol assimilability, expression of the glpR gene (EP 1715056) may beattenuated, or expression of the glycerol metabolism genes (EP 1715055A) such as glpA, glpB, glpC, glpD, glpE, glpF, glpG, glpK, glpQ, glpT,glpX, tpiA, gldA, dhaK, dhaL, dhaM, dhaR, fsa, and talC may be enhanced.

In particular, in order to enhance glycerol assimilability, theexpression of the glycerol dehydrogenase gene (gldA), and thePEP-dependent dihydroxyacetone kinase gene (dhaKLM) or the ATP-dependentdihydroxyacetone kinase gene (dak) can be enhanced in combination.Furthermore, expression of fructose-6-phosphate aldolase (fsaB) may beenhanced (WO2008/102861).

Further, as for glycerol kinase (glpK), a desensitized glpK gene whichis desensitized to the feedback inhibition by fructose-1,6-phosphate(WO2008/081959, WO2008/107277) can be used

The family Enterobacteriaceae includes bacteria belonging to the generaEscherichia, Enterobacter, Erwinia, Klebsiella, Pantoea, Photorhabdus,Providencia, Salmonella, Serratia, Shigella, Morganella, Yersinia, andthe like. In particular, bacteria classified into the familyEnterobacteriaceae according to the taxonomy used by the NCBI (NationalCenter for Biotechnology Information) database(www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=91347) can be used.

The bacterium belonging to the genus Escherichia is not particularlylimited. However, examples include, the bacteria of the phyletic groupsdescribed in the work of Neidhardt et al. (Neidhardt F. C. Ed., 1996,Escherichia coli and Salmonella: Cellular and Molecular Biology/SecondEdition, pp. 2477-2483, Table 1, American Society for MicrobiologyPress, Washington, D.C.). Specific examples include the Escherichia coliW3110 (ATCC 27325), Escherichia coli MG1655 (ATCC 47076) and the likederived from the prototype wild-type strain, K12 strain.

These strains are available from, for example, the American Type CultureCollection (Address: P.O. Box 1549, Manassas, Va. 20108, United Statesof America). That is, registration numbers are given to each of thestrains, and the strains can be ordered by using these numbers. Theregistration numbers of the strains are listed in the catalogue of theAmerican Type Culture Collection. The same shall apply to the strainslisted below with ATCC numbers.

A bacterium belonging to the genus Pantoea means that the bacterium isclassified into the genus Pantoea according to the classification knownto a person skilled in the art of microbiology. Some species ofEnterobacter agglomerans have been recently re-classified into Pantoeaagglomerans, Pantoea ananatis, Pantoea stewartii, or the like, based onthe nucleotide sequence analysis of 16S rRNA, etc. (Int. J. Syst.Bacteriol., 1993, 43, 162-173). Bacteria belonging to the genus Pantoeainclude bacteria re-classified into the genus Pantoea as describedabove.

Typical strains of the Pantoea bacteria include Pantoea ananatis,Pantoea stewartii, Pantoea agglomerans, and Pantoea citrea. Specificexamples include the following strains:

Pantoea ananatis AJ13355 (FERM BP-6614, European Patent Laid-open No.0952221)

Pantoea ananatis AJ13356 (FERM BP-6615, European Patent Laid-open No.0952221)

Although these strains are described as Enterobacter agglomerans inEuropean Patent Laid-open No. 0952221, they are currently classified asPantoea ananatis on the basis of nucleotide sequence analysis of the 16SrRNA etc., as described above.

Examples of the Enterobacter bacteria include Enterobacter agglomerans,Enterobacter aerogenes, and the like. Specifically, the strainsexemplified in European Patent Application Laid-open No. 952221 can beused. Typical strains of the genus Enterobacter include Enterobacteragglomerans ATCC 12287 strain.

Examples of the Erwinia bacteria include Erwinia amylovora and Erwiniacarotovora, and examples of the Klebsiella bacteria include Klebsiellaplanticola. Specific examples include the following strains:

Erwinia amylovora ATCC 15580 strain

Erwinia carotovora ATCC 15713 strain

Klebsiella planticola AJ13399 strain (FERM BP-6600, European PatentLaid-open No. 955368)

Klebsiella planticola AJ13410 strain (FERM BP-6617, European PatentLaid-open No. 955368)

The coryneform bacteria also include bacteria which have previously beenclassified into the genus Brevibacterium but are presently united intothe genus Corynebacterium (Liebl and W. et al, 1991, Int. J. Syst.Bacteriol., 41:255-260), and bacteria belonging to the genusBrevibacterium, which are closely related to the genus Corynebacterium.Specific examples of such coryneform bacteria include the followings:

Corynebacterium acetoacidophilum

Corynebacterium acetoglutamicum

Corynebacterium alkanolyticum

Corynebacterium callunae

Corynebacterium glutamicum

Corynebacterium lilium

Corynebacterium melassecola

Corynebacterium thermoaminogenes (Corynebacterium efficiens)

Corynebacterium herculis

Brevibacterium divaricatum

Brevibacterium flavum

Brevibacterium immariophilum

Brevibacterium lactofermentum (Corynebacterium glutamicum)

Brevibacterium roseum

Brevibacterium saccharolyticum

Brevibacterium thiogenitalis

Corynebacterium ammoniagenes

Brevibacterium album

Brevibacterium cerinum

Microbacterium ammoniaphilum

Specific examples of these bacteria include the following strains:

Corynebacterium acetoacidophilum ATCC 13870

Corynebacterium acetoglutamicum ATCC 15806

Corynebacterium alkanolyticum ATCC 21511

Corynebacterium callunae ATCC 15991

Corynebacterium glutamicum ATCC 13020, ATCC 13032, ATCC 13060

Corynebacterium lilium ATCC 15990

Corynebacterium melassecola ATCC 17965

Corynebacterium thermoaminogenes AJ12340 (FERM BP-1539)

Corynebacterium herculis ATCC 13868

Brevibacterium divaricatum ATCC 14020

Brevibacterium flavum ATCC 13826, ATCC 14067

Brevibacterium immariophilum ATCC 14068

Brevibacterium lactofermentum ATCC 13869 (Corynebacterium glutamicumATCC 13869)

Brevibacterium roseum ATCC 13825

Brevibacterium saccharolyticum ATCC 14066

Brevibacterium thiogenitalis ATCC 19240

Brevibacterium ammoniagenes ATCC 6871, ATCC 6872

Brevibacterium album ATCC 15111

Brevibacterium cerinum ATCC 15112

Microbacterium ammoniaphilum ATCC 15354

The bacterium having an amino acid-producing ability can refer to abacterium having an ability to produce an L-amino acid and secrete itinto a medium when it is cultured in the medium, and includes such abacterium that accumulates the objective L-amino acid in the medium inan amount of 0.5 g/L or more, or 1.0 g/L or more. The L-amino acid caninclude L-alanine, L-arginine, L-asparagine, L-asparatic acid,L-cysteine, L-glutamic acid, L-glutamine, glycine, L-histidine,L-isoleucine, L-leucine, L-lysine, L-methionine, L-phenylalanine,L-proline, L-serine, L-threonine, L-tryptophan, L-tyrosine, andL-valine. L-Threonine, L-lysine, and L-glutamic acid are particularexamples.

Methods for imparting an L-amino acid-producing ability to such bacteriaas mentioned above and methods for enhancing an L-amino acid-producingability of such bacteria as mentioned above are described below.

To impart the ability to produce an L-amino acid, methods conventionallyemployed in the breeding of amino acid-producing coryneform bacteria orbacteria of the genus Escherichia (see “Amino Acid Fermentation”, GakkaiShuppan Center (Ltd.), 1st Edition, published May 30, 1986, pp. 77-100)can be used. Such methods include by acquiring the properties of anauxotrophic mutant, an L-amino acid analogue-resistant strain, or ametabolic regulation mutant, or by constructing a recombinant strain sothat it overexpresses an L-amino acid biosynthesis enzyme. Here, in thebreeding of L-amino acid-producing bacteria, one or more of theabove-described properties such as auxotrophy, analogue resistance, andmetabolic regulation mutation can be imparted. The expression of L-aminoacid biosynthesis enzyme(s) can be enhanced alone or in combinations oftwo or more. Furthermore, the methods of imparting properties such as anauxotrophy, analogue resistance, or metabolic regulation mutation can becombined with enhancement of the biosynthesis enzymes.

An auxotrophic mutant strain, L-amino acid analogue-resistant strain, ormetabolic regulation mutant strain with the ability to produce anL-amino acid can be obtained by subjecting a parent or wild-type strainto conventional mutatagenesis, such as exposure to X-rays or UVirradiation, or treatment with a mutagen such asN-methyl-N′-nitro-N-nitrosoguanidine, then selecting those which exhibitautotrophy, analogue resistance, or a metabolic regulation mutation andwhich also have the ability to produce an L-amino acid.

Moreover, the L-amino acid-producing ability can also be imparted orenhanced by increasing the enzymatic activity by gene recombination. Anexample of the method for increasing enzymatic activity includesmodifying the bacterium so that the expression of a gene coding for anenzyme involved in the biosynthesis of an L-amino acid is enhanced. Geneexpression can also be increased by introducing an amplification plasmidprepared by introducing a DNA fragment containing the gene into anappropriate plasmid which contains, for example, at least a generesponsible for replication and proliferation of the plasmid in themicroorganism, increasing the copy number of the gene on the chromosomeby conjugation, transfer, or the like, or introducing a mutation intothe promoter region of the gene (refer to International PublicationWO95/34672).

When an objective gene is introduced into the aforementionedamplification plasmid or chromosome, any promoter can be used to expressthe gene so long as the chosen promoter functions in the coryneformbacteria. The promoter can be the native promoter for the gene, or amodified promoter. The expression of a gene can also be controlled bysuitably choosing a promoter that strongly functions in coryneformbacteria, or by making the −35 and −10 regions of the promoter closer tothe consensus sequence. These methods for enhancing expression of enzymegenes are fully described in International Publication WO00/18935,European Patent Publication No. 1010755, and so forth.

Specific methods for imparting an L-amino acid-producing ability tobacteria and bacteria imparted with L-amino acid-producing ability areexemplified below.

L-Threonine-Producing Bacteria

Examples of microorganisms having L-threonine-producing ability includebacteria in which one or more activities of L-threonine biosynthesissystem enzymes are enhanced. Examples of L-threonine biosyntheticenzymes include aspartokinase III (lysC), aspartate semialdehydedehydrogenase (asd), aspartokinase I (thrA), homoserine kinase (thrB),threonine synthase (thrC) encoded by thr operon, and aspartateaminotransferase (aspartate transaminase) (aspC). The names of the genescoding for the respective enzymes are mentioned in the parentheses afterthe names of the enzymes (the same shall apply throughout thisspecification). Among these enzymes, aspartate semialdehydedehydrogenase, aspartokinase I, homoserine kinase, aspartateaminotransferase, and threonine synthase are particularl examples. Thegenes coding for the L-threonine biosynthetic enzymes can be introducedinto an Escherichia bacterium which has a reduced ability to decomposethreonine. An example of such an Escherichia bacterium having a reducedability to decompose threonine is the TDH6 strain which is deficient inthreonine dehydrogenase activity (Japanese Patent Laid-open No.2001-346578).

The enzymatic activities of the L-threonine biosynthetic enzymes areinhibited by the endproduct, L-threonine. Therefore, for constructingL-threonine-producing strains, the genes for the L-threoninebiosynthetic enzymes are modified so that the enzymes are desensitizedto feedback inhibition by L-threonine in the L-threonine-producingstrains. The aforementioned thrA, thrB, and thrC genes constitute thethreonine operon, which forms an attenuator structure. The expression ofthe threonine operon is inhibited by isoleucine and threonine in theculture medium and also suppressed by attenuation. Therefore, thethreonine operon can be modified by removing the leader sequence in theattenuation region or the attenuator (refer to Lynn, S. P., et al., J.Mol. Biol. 194:59-69 (1987); WO02/26993; WO2005/049808).

The native promoter of the threonine operon is present upstream of thethreonine operon, and can be replaced with a non-native promoter (referto WO98/04715) or a threonine operon which has been modified so thatexpression of the threonine biosynthesis gene is controlled by therepressor and promoter of λ-phage (EP 0593792). Furthermore, in order tomodify a bacterium so that it is desensitized to feedback inhibition byL-threonine, a strain resistant to α-amino-β-hydroxyisovaleric acid(AHV) can be selected.

The copy number of the threonine operon that is modified to desensitizeto feedback inhibition by L-threonine can be increased, or theexpression of the threonine operon can be increased by ligating it to apotent promoter. The copy number can also be increased by, besidesamplification using a plasmid, transferring the threonine operon to agenome using a transposon, Mu-phage, or the like.

Other than increasing expression of the L-threonine biosynthetic genes,expression of the genes involved in the glycolytic pathway, TCA cycle,or respiratory chain, the genes that regulate the expression of thesegenes, or the genes involved in sugar uptake can also be increased.Examples of such genes effective for L-threonine production include thegenes encoding transhydrogenase (pntAB, EP 733712 B),phosphoenolpyruvate carboxylase (pepC, WO95/06114), phosphoenolpyruvatesynthase (pps, EP 877090 B), and a gene encoding pyruvate carboxylasefrom coryneform bacterium or Bacillus bacterium (WO99/18228, EP 1092776A).

Resistance to L-threonine, L-homoserine, or both can be imparted to thehost by, for example, enhancing expression of a gene that impartsresistance to L-threonine or L-homoserine. Examples of these genesinclude rhtA gene (Livshits, V. A. et al., 2003, Res. Microbiol.,154:123-135), rhtB (EP 0994190 A), rhtC gene (EP 1013765 A), yfiK, andyeaS genes (EP 1016710 A). The methods for imparting L-threonineresistance to a host are described in EP 0994190 A and WO90/04636.

Examples of L-threonine-producing bacteria and parent strains which canbe used to derive such bacteria include, but are not limited to, strainsbelonging to the genus Escherichia, such as E. coli TDH-6/pVIC40 (VKPMB-3996) (U.S. Pat. No. 5,175,107, U.S. Pat. No. 5,705,371), E. coli472T23/pYN7 (ATCC 98081) (U.S. Pat. No. 5,631,157), E. coli NRRL-21593(U.S. Pat. No. 5,939,307), E. coli FERM BP-3756 (U.S. Pat. No.5,474,918), E. coli FERM BP-3519 and FERM BP-3520 (U.S. Pat. No.5,376,538), E. coli MG442 (Gusyatiner et al., Genetika (in Russian), 14,947-956 (1978)), E. coli VL643 and VL2055 (EP 1149911 A) and so forth.

The TDH-6 strain is deficient in the thrC gene, as well as beingsucrose-assimilative, and the ilvA gene has a leaky mutation. Thisstrain also has a mutation in the rhtA gene, which imparts resistance tohigh concentration of threonine or homoserine. The B-3996 straincontains the plasmid pVIC40, which was obtained by inserting the thrA*BCoperon, including a mutant thrA gene, into the RSF1010-derived vector.This mutant thrA gene encodes aspartokinase homoserine dehydrogenase Iwhich is substantially desensitized to feedback inhibition by threonine.The B-3996 strain was deposited on Nov. 19, 1987 in the All-UnionScientific Center of Antibiotics (Nagatinskaya Street 3-A, 117105Moscow, Russia) under the accession number RIA 1867. The strain was alsodeposited at the Russian National Collection of IndustrialMicroorganisms (VKPM) (1 Dorozhny proezd., 1 Moscow 117545, Russia) onApr. 7, 1987 under the accession number VKPM B-3996.

E. coli VKPM B-5318 (EP 0593792 B) can also be used as anL-threonine-producing bacterium or a parent strain. The B-5318 strain isprototrophic with regard to isoleucine, and a temperature-sensitivelambda-phage C1 repressor and PR promoter replace the regulatory regionof the threonine operon in the plasmid pVIC40. The VKPM B-5318 strainwas deposited as an international deposit at the Russian NationalCollection of Industrial Microorganisms (VKPM) (1 Dorozhny proezd., 1Moscow 117545, Russia) on May 3, 1990 under the accession number of VKPMB-5318.

The thrA gene which encodes aspartokinase homoserine dehydrogenase I ofEscherichia coli is located at the nucleotide numbers 337 to 2,799 onthe genome sequence of the Escherichia coli MG1655 strain registeredunder Genbank Accession No. U00096, and codes for the protein registeredunder GenBank accession No. AAC73113. The thrB gene which encodeshomoserine kinase of Escherichia coli is located at the nucleotidenumbers 2,801 to 3,733 on the genome sequence of the Escherichia coliMG1655 strain registered under Genbank Accession No. U00096, and codesfor the protein registered under GenBank accession No. AAC73114. ThethrC gene which encodes threonine synthase of Escherichia coli islocated at the nucleotide numbers 3,734 to 5,020 on the genome sequenceof the Escherichia coli MG1655 strain registered under Genbank AccessionNo. U00096, and codes for the protein registered under GenBank accessionNo. AAC73115. These three genes make up the threonine operon thrLABCdownstream of the thrL gene, which codes for the leader peptide. Toenhance expression of the threonine operon, the attenuator region whichaffects the transcription can be removed from the operon (WO2005/049808,WO2003/097839).

A mutant thrA gene which codes for aspartokinase homoserinedehydrogenase I resistant to feedback inhibition by threonine, as wellas the thrB and thrC genes can be obtained as one operon from thewell-known pVIC40 plasmid, which is present in the threonine-producingE. coli strain VKPM B-3996. pVIC40 is described in detail in U.S. Pat.No. 5,705,371.

The rhtA gene is imparts resistance to homoserine and threonine (rht:resistant to threonine/homoserine), and is located at the nucleotidenumbers 848,433 to 849,320 (complementary strand) on the genome sequenceof the Escherichia coli MG1655 strain registered under Genbank AccessionNo. U00096, and coding for the protein registered under GenBankaccession No. AAC73900. Also, the rhtA23 mutation is an A-for-Gsubstitution at position −1 with respect to the ATG start codon(Livshits, V. A. et al., 2003, Res. Microbiol., 154:123-135, EP 1013765A).

The asd gene of E. coli is located at the nucleotide numbers 3,571,798to 3,572,901 (complementary strand) on the genome sequence of theEscherichia coli MG1655 strain registered under Genbank Accession No.U00096, and codes for the protein registered under GenBank accession No.AAC76458. It can be obtained by PCR (refer to White, T. J. et al.,Trends Genet, 5, 185 (1989)) utilizing primers prepared based on thenucleotide sequence of the gene. The asd genes of other microorganismscan also be obtained in a similar manner.

The aspC gene of E. coli is located at the nucleotide numbers 983,742 to984,932 (complementary strand) on the genome sequence of the Escherichiacoli MG1655 strain registered under Genbank Accession No. U00096, andcodes for the protein registered under GenBank accession No. AAC74014,and can be obtained by PCR. The aspC genes of other microorganisms canalso be obtained in a similar manner.

L-Lysine-Producing Bacteria

L-Lysine-producing bacteria and methods for constructing them areexemplified below.

Examples of strains having L-lysine-producing ability include, forexample, L-lysine analogue-resistant strains and metabolic regulationmutant strains. Examples of L-lysine analogue include, but are notlimited to, oxalysine, lysine hydroxamate, S-(2-aminoethyl)-L-cysteine(also abbreviated as “AEC” hereinafter), γ-methyllysine,α-chlorocaprolactam and so forth. Mutant strains having resistance tothese lysine analogues can be obtained by subjecting a bacteriumbelonging to the family Enterobacteriaceae or a coryneform bacterium toa conventional artificial mutagenesis treatment. Specific examples ofL-lysine-producing bacteria include Escherichia coli AJ11442 (FERMBP-1543, NRRL B-12185, see Japanese Patent Laid-open No. 56-18596 andU.S. Pat. No. 4,346,170), Escherichia coliVL611 strain (Japanese PatentLaid-open No. 2000-189180), and so forth. As an L-lysine-producingEscherichia coli, the WC196 strain may also be used (see InternationalPublication WO96/17930).

Further, an L-lysine-producing bacterium can also be constructed byincreasing activity of an L-lysine biosynthesis system enzyme.Increasing the activity of such an enzyme can be attained by increasingthe copy number of the gene coding for the enzyme in cells, or bymodifying an expression control sequence thereof.

A gene can be modified to enhance expression by, for example, increasingthe copy number of the gene in the cells by means of geneticrecombination techniques. For example, a recombinant DNA can be preparedby ligating a DNA fragment containing the gapA gene with a vector, suchas a multi-copy vector, which is able to function in a hostmicroorganism, and introducing the DNA into a bacterium to transform it.

Increasing the copy number of a gene can also be achieved by introducingmultiple copies of the gene into a genomic DNA of a bacterium. In orderto introduce multiple copies of a gene into a genomic DNA of abacterium, homologous recombination is carried out by using a sequencewhich is present in multiple copies in the genomic DNA as targets. Assequences which is present in multiple copies in genomic DNA, repetitiveDNA, and inverted repeats present at the end of a transposable elementcan be used. Another gene may be introduced next to the gapA gene on agenome in tandem, or it multiple copies may be introduced into anunnecessary gene on a genome. Such gene transfer can be attained byusing a temperature sensitive vector or an integration vector.

Alternatively, as disclosed in Japanese Patent Laid-open No. 2-109985,it is also possible to incorporate the gene into a transposon, andtransfer it, which results in the introduction of multiple copies of thegenes into the genomic DNA. Transfer of the gene to the genome can beconfirmed by performing Southern hybridization using a part of the geneas a probe.

Further, in addition to the aforementioned increase of the gene copynumber, expression of gene can be enhanced by replacing an expressioncontrol sequence such as a promoter of the gene on a genome DNA orplasmid with a stronger one, by making the −35 and −10 regions of thegene closer to the consensus sequence, by amplifying a regulator thatincreases expression of the gene, or by deleting or attenuating aregulator that decreases expression of the gene according to the methodsdescribed in International Publication WO00/18935. For example, the lacpromoter, trp promoter, trc promoter, tac promoter, araBA promoter,lambda phage PR promoter and PL promoter, tet promoter, T7 promoter, Φ10promoter, and so forth are known as strong promoters. A promoter or SDregion of the gapA gene can also be modified so as to become stronger byintroducing a nucleotide substitution or the like. Examples of themethod for evaluating strength of a promoter and strong promoters aredescribed in the paper of Goldstein et al. (Prokaryotic promoters inbiotechnology, Biotechnol. Annu Rev., 1995, 1, 105-128) and so forth. Inaddition, it is known that substitution of several nucleotides in aspacer between the ribosome binding site (RBS) and translationinitiation codon, especially a sequence immediately upstream from theinitiation codon, greatly affects mRNA translation efficiency, andtherefore this sequence may be modified. Expression control regions suchas promoter of a gene may also be identified by using a promoter searchvector or gene analysis software such as GENETYX. By such substitutionor modification of promoter as described above, expression of a gene isenhanced. Substitution of an expression control sequence can also beattained by, for example, a method using a temperature sensitive plasmidor Red-driven integration (WO2005/010175).

Examples of genes coding for L-lysine biosynthetic enzymes include genescoding for enzymes of the diaminopimelate pathway such asdihydrodipicolinate synthase gene (dapA), aspartokinase gene (lysC),dihydrodipicolinate reductase gene (dapB), diaminopimelate decarboxylasegene (lysA), diaminopimelate dehydrogenase gene (ddh) (WO96/40934 forall the foregoing genes), phosphoenolpyrvate carboxylase gene (ppc)(Japanese Patent Laid-open No. 60-87788), aspartate aminotransferasegene (aspC) (Japanese Patent Publication (Kokoku) No. 6-102028),diaminopimelate epimerase gene (dapF) (Japanese Patent Laid-open No.2003-135066), and aspartate semialdehyde dehydrogenease gene (asd)(WO00/61723), and genes coding for enzymes of the aminoadipic acidpathway such as homoaconitate hydratase gene (Japanese Patent Laid-openNo. 2000-157276). In addition, the parent strain may show an increasedlevel of expression of the gene involved in energy efficiency (cyo) (EP1170376 A), the gene coding for nicotinamide nucleotide transhydrogenase(pntAB) (U.S. Pat. No. 5,830,716), the ybjE gene coding for a proteinhaving L-lysine excretion activity (WO2005/073390), the gene coding forglutamate dehydrogenase (gdhA) (Valle F. et al., 1983, Gene 23:199-209),or an arbitrary combination of these. Abbreviations for the genes areshown in the parentheses.

It is known that the wild-type dihydrodipicolinate synthase derived fromEscherichia coli suffers from feedback inhibition by L-lysine, and it isknown that the wild-type aspartokinase derived from Escherichia colisuffers from suppression and feedback inhibition by L-lysine. Therefore,when the dapA gene and lysC gene are used, these genes can encode formutant enzymes desensitized to the feedback inhibition by L-lysine.

Examples of DNA encoding a mutant dihydrodipicolinate synthetasedesensitized to feedback inhibition by L-lysine include a DNA encodingsuch a protein having an amino acid sequence in which the histidineresidue at the position 118 is replaced by tyrosine residue. Examples ofDNA encoding a mutant aspartokinase desensitized to feedback inhibitionby L-lysine include a DNA encoding an AKIII having an amino acidsequence in which the threonine residue at the position 352, the glycineresidue at the position 323, and the methionine residue at the position318 are replaced by isoleucine, asparagine and isoleucine residues,respectively (for these mutants, see U.S. Pat. Nos. 5,661,012 and6,040,160). Such mutant DNAs can be obtained by site-specificmutagenesis using PCR or the like.

A wide host-range plasmids RSFD80, pCAB1, and pCABD2 are known whichcontain a mutant dapA gene encoding a mutant dihydrodipicolinatesynthase and a mutant lysC gene encoding a mutant aspartokinase (U.S.Pat. No. 6,040,160). Escherichia coli JM109 strain transformed with theplasmid was named AJ12396 (U.S. Pat. No. 6,040,160), and the strain wasdeposited at the National Institute of Bioscience and Human-Technology,Agency of Industrial Science and Technology, Ministry of InternationalTrade and Industry (currently National Institute of Advanced IndustrialScience and Technology, International Patent Organism Depositary) onOct. 28, 1993 and assigned an accession number of FERM P-13936, and thedeposit was then converted to an international deposit under theprovisions of Budapest Treaty on Nov. 1, 1994 and assigned an accessionnumber of FERM BP-4859. RSFD80 can be obtained from the AJ12396 strainby a conventional method.

Examples of such enzymes involved in the L-lysine production includehomoserine dehydrogenase, lysine decarboxylase (cadA, ldcC), malicenzyme, and so forth, and strains in which activities of these enzymesare decreased or deleted are disclosed in WO95/23864, WO96/17930,WO2005/010175, and so forth.

Expression of both the cadA and ldcC genes encoding lysine decarboxylasecan be decreased in order to decrease or delete the lysine decarboxylaseactivity. Expression of both genes can be decreased by, for example, themethod described in WO2006/078039.

In order to reduce or eliminate activities of these enzymes, a mutationmay be introduced into the genes which encode the enzymes on the genomeby a usual mutagenesis method or gene recombination technique so thatintracellular activities of the enzymes are reduced or eliminated. Suchintroduction of a mutation can be achieved by, for example, usinggenetic recombination to eliminate the genes coding for the enzymes onthe genome or to modify an expression control sequence such as apromoter or the Shine-Dalgarno (SD) sequence. It can also be achieved byintroducing a mutation for amino acid substitution (missense mutation),a stop codon (nonsense mutation), or a frame shift mutation for addingor deleting one or two nucleotides into regions coding for the enzymeson the genome, or partially or totally deleting the genes (Wang, J. P.et al., 2006, J. Agric. Food Chem., 54:9405-9410; Winkler W. C., 2005,Curr. Opin. Chem. Biol., 9:594-602; Qiu Z. and Goodman M. F., 1997, J.Biol. Chem., 272:8611-8617; Wente, S. R. and Schachman, H. K., 1991, J.Biol. Chem., 266:20833-20839). The enzymatic activities can also bedecreased or eliminated by constructing a gene coding for a mutantenzyme in which the coding region is totally or partially deleted, andsubstituting it for a normal gene on the genome by homologousrecombination or the like, or by introducing a transposon or IS factorinto the gene.

For example, in order to introduce a mutation that decreases oreliminates the activities of the above-mentioned enzymes by geneticrecombination, the following methods are used. A mutant gene is preparedby modifying a partial sequence of an objective gene so that it does notencode an enzyme that can function normally, and then a bacteriumbelonging to the family Enterobacteriaceae can be transformed with a DNAcontaining the mutant gene to cause recombination of a correspondinggene on the genome with the mutant gene to substitute the mutant genefor the objective gene on the genome. Examples of such gene substitutionusing homologous recombination include methods of using a linear DNAsuch as the method called Red-driven integration (Datsenko, K. A, andWanner, B. L., 2000, Proc. Natl. Acad. Sci. USA, 97:6640-6645), and themethod utilizing the Red driven integration in combination with anexcisive system derived from λ phage (Cho, E. H., Gumport, R. I.,Gardner, J. F., 2002, J. Bacteriol., 184:5200-5203) (refer toWO2005/010175), a method of using a plasmid containing a temperaturesensitive replication origin (U.S. Pat. No. 6,303,383, Japanese PatentLaid-open No. 05-007491), and so forth. Further, such site-specificmutagenesis based on gene substitution using homologous recombinationcan also be performed by using a plasmid that is not able to replicatein a host.

Examples of L-lysine-producing bacteria include Escherichia coliWC196ΔcadAΔldc/pCABD2 (WO2006/078039). The strain was constructed byintroducing the plasmid pCABD2 containing lysine biosynthesis genes(U.S. Pat. No. 6,040,160) into the WC196 strain having disrupted cadAand ldcC genes, which encode lysine decarboxylase. The WC196 strain wasbred from the W3110 strain, which was derived from Escherichia coliK-12, by replacing the wild-type lysC gene on the chromosome of theW3110 strain with a mutant lysC gene encoding a mutant aspartokinase IIIin which threonine at position 352 was replaced with isoleucine,resulting in desensitization of the feedback inhibition thereof byL-lysine (U.S. Pat. No. 5,661,012), and conferring AEC resistance to theresulting strain (U.S. Pat. No. 5,827,698). The WC196 strain wasdesignated Escherichia coli AJ13069, deposited at the National Instituteof Bioscience and Human-Technology, Agency of Industrial Science andTechnology (currently National Institute of Advanced Industrial Scienceand Technology, International Patent Organism Depositary, TsukubaCentral 6, 1-1, Higashi 1-Chome, Tsukuba-shi, Ibaraki-ken, 305-8566,Japan) on Dec. 6, 1994, and assigned an accession number of FERMP-14690. Then, it was converted to an international deposit under theprovisions of the Budapest Treaty on Sep. 29, 1995, and assigned anaccession number of FERM BP-5252 (U.S. Pat. No. 5,827,698). TheWC196ΔcadAΔldc strain itself is also a L-lysine-producing bacterium. TheWC196ΔcadAΔldc was designated AJ110692, and deposited at the independentadministrative agency, National Institute of Advanced Industrial Scienceand Technology, International Patent Organism Depositary (TsukubaCentral 6, 1-1, Higashi 1-Chome, Tsukuba-shi, Ibaraki-ken, 305-8566,Japan) on Oct. 7, 2008 as an international deposit and assigned anaccession number of FERM BP-11027.

The plasmid pCABD2 contains a mutant dapA gene derived from Escherichiacoli and coding for a dihydrodipicolinate synthase (DDPS) having amutation for desensitization to the feedback inhibition by L-lysine, amutant lysC gene derived from Escherichia coli and coding foraspartokinase III having a mutation for desensitization to the feedbackinhibition by L-lysine, the dapB gene derived from Escherichia coli andcoding for dihydrodipicolinate reductase, and the ddh gene derived fromBrevibacterium lactofermentum and coding for diaminopimelatedehydrogenase (International Publications WO95/16042 and WO01/53459).

The procedures described above for enhancing gene expression of theenzymes involved in the L-lysine biosynthesis, and the methods forreducing the enzymatic activities can similarly be applied to genescoding for other L-amino acid biosynthesis enzymes.

Examples of L-lysine producing coryneform bacteria include AEC-resistantmutant strains (Brevibacterium lactofermentum AJ11082 (NRRL B-11470)strain etc., refer to Japanese Patent Publication Nos. 56-1914, 56-1915,57-14157, 57-14158, 57-30474, 58-10075, 59-4993, 61-35840, 62-24074,62-36673, 5-11958, 7-112437 and 7-112438); mutant strains requiring anamino acid such as L-homoserine for their growth (refer to JapanesePatent Publication Nos. 48-28078 and 56-6499); mutant strains showingresistance to AEC and further requiring an amino acid such as L-leucine,L-homoserine, L-proline, L-serine, L-arginine, L-alanine and L-valine(refer to U.S. Pat. Nos. 3,708,395 and 3,825,472); L-lysine-producingmutant strains showing resistance to DL-α-amino-ε-caprolactam,α-amino-lauryllactam, aspartic acid analogue, sulfa drug, quinoid andN-lauroylleucine; L-lysine-producing mutant strains showing resistanceto oxaloacetate decarboxylase or a respiratory tract enzyme inhibitor(Japanese Patent Laid-open Nos. 50-53588, 50-31093, 52-102498, 53-9394,53-86089, 55-9783, 55-9759, 56-32995, 56-39778, Japanese PatentPublication Nos. 53-43591 and 53-1833); L-lysine-producing mutantstrains requiring inositol or acetic acid (Japanese Patent Laid-openNos. 55-9784 and 56-8692); L-lysine-producing mutant strains that aresusceptible to fluoropyruvic acid or a temperature of 34° C. or higher(Japanese Patent Laid-open Nos. 55-9783 and 53-86090);L-lysine-producing mutant strains of Brevibacterium or Corynebacteriumbacteria showing resistance to ethylene glycol (U.S. Pat. No. 4,411,997)and so forth.

L-Cysteine-Producing Bacteria

Examples of L-cysteine-producing bacteria and parent strains which canbe used to derive such bacteria include, but not limited to, Escherichiabacteria such as E. coli JM15 transformed with multiple kinds of cysEgene alleles encoding serine acetyltransferase resistant to feedbackinhibition (U.S. Pat. No. 6,218,168, Russian Patent Application No.2003121601), E. coli W3110 in which a gene encoding a protein suitablefor excretion of cytotoxic substances is overexpressed (U.S. Pat. No.5,972,663), E. coli strain having decreased cysteine desulfhydraseactivity (Japanese Patent Laid-open No. 11-155571), and E. coli W3110 inwhich activity of the positive transcriptional control factor of thecysteine regulon encoded by the cysB gene is increased (WO01/27307).

L-Leucine-Producing Bacteria

Examples of L-leucine-producing bacteria and parent strains which can beused to derive L-leucine-producing bacteria include, but are not limitedto, Escherichia bacterial strains, such as E. coli strains resistant toleucine (for example, the 57 strain (VKPM B-7386, U.S. Pat. No.6,124,121)) or leucine analogues including β-2-thienylalanine,3-hydroxyleucine, 4-azaleucine, 5,5,5-trifluoroleucine, and so forth(Japanese Patent Publication No. 62-34397 and Japanese Patent Laid-openNo. 8-70879), E. coli strains obtained by the genetic engineering methoddescribed in WO96/06926, E. coli H-9068 (Japanese Patent Laid-open No.8-70879), and so forth.

The bacterium can be improved by enhancing expression of one or moregenes involved in L-leucine biosynthesis. Examples of such genes includethe genes of the leuABCD operon, a typical example of which is themutant leuA gene coding for isopropyl malate synthase which has beenmutated to be desensitized to feedback inhibition by L-leucine (U.S.Pat. No. 6,403,342). In addition, the bacterium can be improved byenhancing expression of one or more genes coding for proteins whichincrease export of L-amino acid from bacterial cells. Examples of suchgenes include the b2682 and b2683 genes (the ygaZH genes) (EP 1239041A2).

Examples of L-isoleucine-producing strains of coryneform bacteriainclude the coryneform bacterium in which the brnE gene coding for abranched chain amino acid excretion protein is amplified (JapanesePatent Laid-open No. 2001-169788), the coryneform bacterium impartedwith L-isoleucine-producing ability by protoplast fusion with anL-lysine-producing bacterium (Japanese Patent Laid-open No. 62-74293),the coryneform bacterium of which homoserine dehydrogenase is enhanced(Japanese Patent Laid-open No. 62-91193), the threonine hydroxameteresistant strain (Japanese Patent Laid-open No 62-195293), α-ketomalonicacid resistant strain (Japanese Patent Laid-open No. 61-15695), and themethyl lysine resistant strain (Japanese Patent Laid-open No. 61-15696).

L-Histidine-Producing Bacteria

Examples of L-histidine-producing bacteria and parent strains which canbe used to derive L-histidine-producing bacteria include, but are notlimited to, Escherichia bacterial strains, such as E. coli strain 24(VKPM B-5945, RU2003677), E. coli strain 80 (VKPM B-7270, RU2119536), E.coli NRRL B-12116-B 12121 (U.S. Pat. No. 4,388,405), E. coli H-9342(FERM BP-6675), E. coli H-9343 (FERM BP-6676) (U.S. Pat. No. 6,344,347),E. coli H-9341 (FERM BP-6674) (EP 1085087 A), E. coli AI80/pFM201 (U.S.Pat. No. 6,258,554), and so forth.

Examples of L-histidine-producing bacteria and parent strains which canbe used to derive L-histidine-producing bacteria also include strains inwhich the expression of one or more genes encoding L-histidinebiosynthetic enzymes are enhanced. Examples of such genes include thegenes encoding ATP phosphoribosyltransferase (hisG), phosphoribosyl AMPcyclohydrolase (hisI), phosphoribosyl-ATP pyrophosphohydrolase (hisI),phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase(hisA), amidotransferase (hisH), histidinol phosphate aminotransferase(hisC), histidinol phosphatase (hisB), histidinol dehydrogenase (hisD),and so forth.

It is known that the L-histidine biosynthetic enzymes encoded by hisGand hisBHAFI are inhibited by L-histidine, and therefore the ability toproduce L-histidine can also be efficiently enhanced by introducing amutation which confers resistance to the feedback inhibition to the genecoding for ATP phosphoribosyltransferase (hisG) (Russian Patent Nos.2003677 and 2119536).

Specific examples of strains which are able to produce L-histidineinclude E. coli FERM-P 5038 and 5048 which have been transformed with avector carrying a DNA encoding an L-histidine biosynthetic enzyme(Japanese Patent Laid-open No. 56-005099), E. coli strains transformedwith a gene encoding a protein involved in amino acid export (EP 1016710A), E. coli 80 strain which is resistant to sulfaguanidine,DL-1,2,4-triazole-3-alanine, and streptomycin (VKPM B-7270, RussianPatent No. 2119536), and so forth.

L-Glutamic Acid-Producing Bacteria

Examples of L-glutamic acid-producing bacteria and parent strains whichcan be used to derive L-glutamic acid-producing bacteria include, butare not limited to, Escherichia bacterial strains, such as E. coliVL334thrC⁺ (EP 1172433). E. coli VL334 (VKPM B-1641) is auxotrophic forL-isoleucine and L-threonine and contains mutant thrC and ilvA genes(U.S. Pat. No. 4,278,765). A wild-type allele of the thrC gene wastransferred by general transduction using bacteriophage P1 grown onwild-type E. coli K12 (VKPM B-7) cells, resulting in the L-isoleucineauxotrophic L-glutamic acid-producing strain VL334thrC⁺ (VKPM B-8961).

Examples of L-glutamic acid-producing bacteria and parent strains whichcan be used to derive L-glutamic acid-producing bacteria also include,but are not limited to, strains in which expression of one or more genesencoding an L-glutamic acid biosynthetic enzyme is enhanced. Examples ofsuch genes include the genes encoding glutamate dehydrogenase (gdhA),glutamine synthetase (glnA), glutamate synthetase (gltAB), isocitratedehydrogenase (icdA), aconitate hydratase (acnA, acnB), citrate synthase(gltA), methyl citrate synthase (prpC), phosphoenolpyruvate carboxylase(ppc), pyruvate dehydrogenase (aceEF, lpdA), pyruvate kinase (pykA,pykF), phosphoenolpyruvate synthase (ppsA), enolase (eno),phosphoglyceromutase (pgmA, pgmI), phosphoglycerate kinase (pgk),glyceraldehyde-3-phophate dehydrogenase (gapA), triose phosphateisomerase (tpiA), fructose bisphosphate aldolase (fbp),phosphofructokinase (pfkA, pfkB), glucose phosphate isomerase (pgi), andso forth. Among these enzymes, glutamate dehydrogenase, citratesynthase, phosphoenolpyruvate carboxylase, and methyl citrate synthaseare particular examples.

Examples of strains which have been modified so that expression of thecitrate synthetase gene, the phosphoenolpyruvate carboxylase gene,and/or the glutamate dehydrogenase gene is enhanced include thosedisclosed in EP 1078989 A, EP 955368 A, and EP 952221 A.

Examples of L-glutamic acid-producing bacteria and parent strains whichcan be used to derive L-glutamic acid-producing bacteria also includestrains in which the activity of one or more enzymes that catalyze oneor more reactions which direct synthesis of one or more compounds otherthan L-glutamic acid, for example, by directing synthesis away from thebiosynthetic pathway of L-glutamic acid, is reduced or eliminated.Examples of these enzymes include isocitrate lyase (aceA),α-ketoglutarate dehydrogenase (sucA), phosphotransacetylase (pta),acetate kinase (ack), acetohydroxy acid synthase (ilvG), acetolactatesynthase (ilvI), formate acetyltransferase (pfl), lactate dehydrogenase(ldh), glutamate decarboxylase (gadAB), and so forth. Escherichiabacteria without α-ketoglutarate dehydrogenase activity or with reducedα-ketoglutarate dehydrogenase activity and methods to obtain suchbacteria are described in U.S. Pat. Nos. 5,378,616 and 5,573,945.

Specifically, these strains include the following:

E. coli W3110sucA::Km^(r)

E. coli AJ12624 (FERM BP-3853)

E. coli AJ12628 (FERM BP-3854)

E. coli AJ12949 (FERM BP-4881)

E. coli W3110sucA::Km^(r) is obtained by disrupting the α-ketoglutaratedehydrogenase gene (hereinafter also referred to as the “sucA gene”) ofE. coli W3110. This strain is completely deficient in α-ketoglutaratedehydrogenase.

Examples of coryneform bacteria with decreased α-ketoglutaratedehydrogenase activity include, for example, the following strains:

Brevibacterium lactofermentum L30-2 strain (Japanese Patent Laid-openNo. 2006-340603)

Brevibacterium lactofermentum ΔS strain (WO95/34672)

Brevibacterium lactofermentum AJ12821 (FERM BP-4172, French Patent No.9401748)

Brevibacterium flavum AJ12822 (FERM BP-4173, French Patent No. 9401748)

Corynebacterium glutamicum AJ12823 (FERM BP-4174, French Patent No.9401748)

Corynebacterium glutamicum L30-2 strain (Japanese Patent Laid-open No.2006-340603)

Other examples of L-glutamic acid-producing bacterium includeEscherichia bacteria that are resistant to an aspartic acidantimetabolite. These strains can also be deficient in α-ketoglutaratedehydrogenase and include, for example, E. coli AJ13199 (FERM BP-5807)(U.S. Pat. No. 5,908,768), FFRM P-12379, which additionally is decreasedin an activity to decompose L-glutamic acid (U.S. Pat. No. 5,393,671);AJ13138 (FERM BP-5565) (U.S. Pat. No. 6,110,714), and so forth.

An example of an L-glutamic acid-producing bacterium which belongs toPantoea ananatis is the Pantoea ananatis AJ13355 strain. This strain wasisolated from soil in Iwata-shi, Shizuoka-ken, Japan, and was identifiedas being able to proliferate in a medium containing L-glutamic acid anda carbon source at a low pH. The Pantoea ananatis AJ13355 strain wasdeposited at the National Institute of Advanced Industrial Science andTechnology, International Patent Organism Depositary (Tsukuba Central 6,1-1, Higashi 1-Chome, Tsukuba-shi, Ibaraki-ken, 305-8566, Japan) on Feb.19, 1998 and assigned an accession number of FERM P-16644. It was thenconverted to an international deposit under the provisions of BudapestTreaty on Jan. 11, 1999 and assigned an accession number of FERMBP-6614. This strain was originally identified as Enterobacteragglomerans when it was isolated, and deposited as Enterobacteragglomerans AJ13355. However, it was recently re-classified as Pantoeaananatis on the basis of nucleotide sequencing of 16S rRNA and so forth.

Furthermore, examples of an L-glutamic acid-producing bacterium ofPantoea ananatis also include Pantoea bacteria deficient inα-ketoglutarate dehydrogenase (αKGDH) activity or having reduced αKGDHactivity. Examples of such a strain include AJ13356 (U.S. Pat. No.6,331,419), which was derived by deleting the αKGDH-E1 subunit gene(sucA) in AJ13355, and the SC17sucA strain (U.S. Pat. No. 6,596,517),which is a sucA gene deficient strain derived from the SC17 strain,selected from AJ13355 for its low phlegm production properties. TheAJ13356 strain was deposited at the National Institute of Bioscience andHuman-Technology, Agency of Industrial Science and Technology(currently, the independent administrative agency, National Institute ofAdvanced Industrial Science and Technology, International PatentOrganism Depositary (Tsukuba Central 6, 1-1, Higashi 1-Chome,Tsukuba-shi, Ibaraki-ken, Japan, postal code: 305-8566)) on Feb. 19,1998, and assigned an accession number of FERM P-16645. Then, thedeposit was converted into an international deposit under the provisionsof the Budapest Treaty on Jan. 11, 1999, and assigned an accessionnumber of FERM BP-6616. Although the AJ13355 and AJ13356 strains weredeposited at the aforementioned depository as Enterobacter agglomerans,they are referred to as Pantoea ananatis in this specification. TheSC17sucA strain was assigned the private number of AJ417, and depositedat the National Institute of Advanced Industrial Science and Technology,International Patent Organism Depositary on Feb. 26, 2004, under anaccession number of FERM BP-08646.

Examples of L-glutamic acid-producing Pantoea ananatis bacteria furtherinclude SC17sucA/RSFCPG+pSTVCB, AJ13601, NP106, and NA1 strains. TheSC17sucA/RSFCPG+pSTVCB strain was obtained by introducing the plasmidRSFCPG containing the citrate synthase gene (gltA), phosphoenolpyruvatecarboxylase gene (ppsA), and glutamate dehydrogenase gene (gdhA) derivedfrom Escherichia coli, and the plasmid pSTVCB containing the citratesynthase gene (gltA) derived from Brevibacterium lactofermentum, intothe SC17sucA strain. The AJ13601 strain was selected from theSC17sucA/RSFCPG+pSTVCB strain for its resistance to high concentrationof L-glutamic acid at a low pH. Furthermore, the NP106 strain wasderived from the AJ13601 strain by eliminating the RSFCPG+pSTVCBplasmid. The AJ13601 strain was deposited at the National Institute ofAdvanced Industrial Science and Technology, International PatentOrganism Depositary (Tsukuba Central 6, 1-1, Higashi 1-Chome,Tsukuba-shi, Ibaraki-ken, Japan, postal code: 305-8566) on Aug. 18,1999, and assigned accession number FERM P-17516. Then, the deposit wasconverted into an international deposit under the provisions of theBudapest Treaty on Jul. 6, 2000, and assigned an accession number FERMBP-7207.

Furthermore, the ability to produce L-glutamic acid can also be impartedto coryneform bacteria by a method of amplifying the yggB gene codingfor the mechanosensitive channel (WO2006/070944), and a method ofintroducing a mutant yggB gene in which a mutation is introduced intothe coding region. The yggB gene is a gene located at the nucleotidenumbers 1,337,692 to 1,336,091 (complementary strand) of the genomesequence of Corynebacterium glutamicum ATCC 13032 strain registered withGenbank Accession No. NC_(—)003450, and coding for a membrane proteinalso called NCg11221 and registered with GenBank accession No.NP_(—)600492.

Examples of other methods for imparting or enhancing L-glutamicacid-producing ability also include a method of imparting resistance toan organic acid analogue, a respiratory chain inhibitor, etc., and amethod of imparting sensitivity to a cell wall synthesis inhibitor.Examples of such methods include the methods of imparting resistance tomonofluoroacetic acid (Japanese Patent Laid-open No. 50-113209), themethod of imparting resistance to adenine or thymine (Japanese PatentLaid-open No. 57-065198), the method of attenuating urease (JapanesePatent Laid-open No. 52-038088), the method of imparting resistance tomalonic acid (Japanese Patent Laid-open No. 52-038088), the method ofimparting resistance to benzopyrones or naphthoquinones (Japanese PatentLaid-open No. 56-1889), the method of imparting resistance to HOQNO(Japanese Patent Laid-open No. 56-140895), the method of impartingresistance to α-ketomalonic acid (Japanese Patent Laid-open No.57-2689), the method of imparting resistance to guanidine (JapanesePatent Laid-open No. 56-35981), the method of imparting sensitivity topenicillin (Japanese Patent Laid-open No. 4-88994), and so forth.

Specific examples of such resistant strains include the followingstrains:

Brevibacterium flavum AJ3949 (FERM BP-2632; Japanese Patent Laid-openNo. 50-113209)

Corynebacterium glutamicum AJ11628 (FERM P-5736; Japanese PatentLaid-open No. 57-065198)

Brevibacterium flavum AJ11355 (FERM P-5007; Japanese Patent Laid-openNo. 56-1889)

Corynebacterium glutamicum AJ11368 (FERM P-5020; Japanese PatentLaid-open No. 56-1889)

Brevibacterium flavum AJ11217 (FERM P-4318; Japanese Patent Laid-openNo. 57-2689)

Corynebacterium glutamicum AJ11218 (FERM P-4319; Japanese PatentLaid-open No. 57-2689)

Brevibacterium flavum AJ11564 (FERM BP-5472; Japanese Patent Laid-openNo. 56-140895)

Brevibacterium flavum AJ11439 (FERM BP-5136; Japanese Patent Laid-openNo. 56-35981)

Corynebacterium glutamicum H7684 (FERM BP-3004; Japanese PatentLaid-open No. 04-88994)

Brevibacterium lactofermentum AJ11426 (FERM P-5123; Japanese PatentLaid-open No. 56-048890)

Corynebacterium glutamicum AJ11440 (FERM P-5137; Japanese PatentLaid-open No. 56-048890)

Brevibacterium lactofermentum AJ11796 (FERM P-6402; Japanese PatentLaid-open No. 58-158192)

L-Phenylalanine-Producing Bacteria

Examples of L-phenylalanine-producing bacteria and parent strains whichcan be used to derive L-phenylalanine-producing bacteria include, butare not limited to, Escherichia bacterial strains, such as E. coliAJ12739 (tyrA::Tn10, tyrR) (VKPM B-8197) which lacks chorismatemutase-prephenate dehydrogenase and the tyrosine repressor(WO03/044191), E. coli HW1089 (ATCC 55371) which contains the pheA34gene coding for chorismate mutase-prephenate dehydratase which has beenmutated to be desensitized to feedback inhibition (U.S. Pat. No.5,354,672), E. coli MWEC101-b (KR8903681), E. coli NRRL B-12141, NRRLB-12145, NRRL B-12146, and NRRL B-12147 (U.S. Pat. No. 4,407,952). Also,the following strains can be used to derive L-phenylalanine-producingbacteria: E. coli K-12 [W3110(tyrA)/pPHAB (FERM BP-3566) which containsgenes coding for chorismate mutase-prephenate dehydratase which has beenmutated to be desensitized to feedback inhibition, E. coli K-12[W3110(tyrA)/pPHAD] (FERM BP-12659), E. coli K-12 [W3110(tyrA)/pPHATerm](FERM BP-12662), and E. coli K-12 [W3110(tyrA)/pBR-aroG4, pACMAB] (alsoknown as AJ12604 (FERM BP-3579) (EP 488424 B1). Furthermore, EscherichiaL-phenylalanine-producing bacteria with enhanced activity of the proteinencoded by the yedA gene or the yddG gene can also be used (U.S. PatentPublished Applications Nos. 2003/0148473 and 2003/0157667, WO03/044192).

As phenylalanine-producing coryneform bacteria, the Cornebacteriumglutamicum BPS-13 (FERM BP-1777), K77 (FERM BP-2062), and K78 (FERMBP-2063) (European Patent Laid-open No. 331145, Japanese PatentLaid-open No. 02-303495), of which phosphoenolpyruvate carboxylase orpyruvate kinase activity is reduced, tyrosine-auxotrophic strain(Japanese Patent Laid-open No. 05-049489), and so forth can be used.

A bacterium which efficiently produces phenylalanine can also beobtained by modifying a bacterium so that the bacterium incorporatesby-products, for example, by increasing the expression amount of theL-tryptophan uptake gene, tnaB or mtr, or the L-tyrosine uptake gene,tyrP (European Patent No. 1484410).

L-Tryptophan-Producing Bacteria

Examples of L-tryptophan-producing bacteria and parent strains which canbe used to derive L-tryptophan-producing bacteria include, but are notlimited to, Escherichia bacterial strains, such as E. coliJP4735/pMU3028 (DSM10122) and E. coli JP6015/pMU91 (DSM10123) which lacktryptophanyl-tRNA synthetase encoded by a mutant trpS gene (U.S. Pat.No. 5,756,345), E. coli SV164 (pGH5) which contains the serA alleleencoding phosphoglycerate dehydrogenase and the trpE allele encodinganthranilate synthase, which are desensitized to feedback inhibition byserine and tryptophan, respectively (U.S. Pat. No. 6,180,373), E. coliAGX17 (pGX44) (NRRL B-12263), and E. coli AGX6(pGX50)aroP (NRRL B-12264)which lack tryptophanase (U.S. Pat. No. 4,371,614), and E. coliAGX17/pGX50, pACKG4-pps in which phosphoenolpyruvate-producing abilityis enhanced (WO97/08333, U.S. Pat. No. 6,319,696).L-Tryptophan-producing bacteria belonging to the genus Escherichia withenhanced activity of the protein encoded by the yedA gene or the yddGgene can also be used (U.S. Patent Published Application Nos.2003/0148473 and 2003/0157667).

Examples of L-tryptophan-producing bacteria and parent strains which canbe used to derive L-tryptophan-producing bacteria also include strainsin which one or more activities of the following enzymes are enhanced:anthranilate synthase (trpE), phosphoglycerate dehydrogenase (serA),3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (aroG),3-dehydroquinate synthase (aroB), shikimate dehydrogenase (aroE),shikimate kinase (aroL), 5-enolpyruvylshikimate-3-phosphate synthase(aroA), chorismate synthase (aroC), prephenate dehydratase, chorismatemutase, and tryptophan synthase (trpAB). Prephenate dehydratase andchorismate mutase are encoded by the pheA gene as a bifunctional enzyme(chorismate mutase/prephenate dehydratase, CM/PDH). Among these enzymes,phosphoglycerate dehydrogenase,3-deoxy-D-arabinoheptulosonate-7-phosphate synthase, 3-dehydroquinatesynthase, shikimate dehydratase, shikimate kinase,5-enolpyruvylshikimate-3-phosphate synthase, chorismate synthase,prephenate dehydratase, and chorismate mutase-prephenate dehydratase areparticularl examples. Anthranilate synthase and phosphoglyceratedehydrogenase both suffer from feedback inhibition by L-tryptophan andL-serine, and therefore a mutation desensitizing the feedback inhibitioncan be introduced into the genes encoding these enzymes. Specificexamples of strains having such a mutation include E. coli SV164 havinga desensitized type anthranilate synthase and a transformant strainobtained by introducing pGH5 (WO94/08031) containing a mutant serA genecoding for phosphoglycerate dehydrogenase desensitized to the feedbackinhibition into E. coli SV164.

Examples of L-tryptophan-producing bacteria and parent strains which canbe used to derive L-tryptophan-producing bacteria also include strainswhich have been transformed with the tryptophan operon, which contains agene encoding inhibition-desensitized anthranilate synthase (JapanesePatent Laid-open Nos. 57-71397, 62-244382, U.S. Pat. No. 4,371,614).Moreover, L-tryptophan-producing ability can be imparted by enhancingexpression of a gene which encodes tryptophan synthase in the tryptophanoperon (trpBA). Tryptophan synthase includes both α and β subunits,which are encoded by trpA and trpB, respectively. In addition,L-tryptophan-producing ability can be improved by enhancing expressionof the isocitrate lyase-malate synthase operon (WO2005/103275).

As coryneform bacteria, Corynebacterium glutamicum AJ12118 (FERM BP-478,Japanese Patent No. 01681002), which is resistant to sulfaguanidine, thecoryneform bacterium introduced with the tryptophan operon (JapanesePatent Laid-open No. 63-240794), and the coryneform bacterium introducedwith a gene coding for shikimate kinase derived from a coryneformbacterium (Japanese Patent Laid-open No. 01-994749) can be used.

L-Proline-Producing Bacteria

Examples of L-proline-producing bacteria and parent strains which can beused to derive L-proline-producing bacteria include, but are not limitedto, Escherichia bacterial strains, such as E. coli 702ilvA (VKPM B-8012)which lacks the ilvA gene and can produce L-proline (EP 1172433).

The bacterium can be improved by enhancing expression of one or moregenes involved in L-proline biosynthesis. Examples of genes forL-proline-producing bacteria include the proB gene coding for glutamatekinase which is desensitized to feedback inhibition by L-proline (DEPatent 3127361). In addition, the bacterium can be improved by enhancingexpression of one or more genes coding for proteins responsible forsecretion of L-amino acids from the bacterial cell. Examples of suchgenes are the b2682 and b2683 genes (ygaZH genes) (EP 1239041 A2).

Escherichia bacteria which produce L-proline include the following E.coli strains: NRRL B-12403 and NRRL B-12404 (GB Patent 2075056), VKPMB-8012 (Russian patent application 2000124295), plasmid mutantsdescribed in DE Patent 3127361, plasmid mutants described by Bloom F. R.et al. (The 15th Miami Winter Symposium, 1983, p. 34), and so forth.

L-Arginine-Producing Bacteria

Examples of L-arginine-producing bacteria and parent strains which canbe used to derive L-arginine-producing bacteria include, but are notlimited to, Escherichia bacterial strains, such as E. coli strain 237(VKPM B-7925) (U.S. Patent Published Application No. 2002/058315 A1) andits derivative strains harboring mutant N-acetylglutamate synthase(Russian Patent Application No. 2001112869), E. coli strain 382 (VKPMB-7926) (EP 1170358 A1), and an arginine-producing strain transformedwith an argA gene encoding N-acetylglutamate synthetase (EP 1170361 A1).

Examples of L-arginine-producing bacteria and parent strains which canbe used to derive L-arginine-producing bacteria also include strains inwhich the expression of one or more genes encoding an L-argininebiosynthetic enzyme are enhanced. Examples of such genes include theN-acetylglutamyl phosphate reductase gene (argC), ornithine acetyltransferase gene (argJ), N-acetylglutamate kinase gene (argB),acetylornithine transaminase gene (argD), ornithine carbamoyltransferase gene (argF), argininosuccinic acid synthetase gene (argG),argininosuccinic acid lyase gene (argH), and carbamoyl phosphatesynthetase gene (carAB).

L-Valine-Producing Bacteria

Examples of L-valine-producing bacteria and parent strains which can beused to derive L-valine-producing bacteria include, but are not limitedto, strains which have been modified to overexpress the ilvGMEDA operon(U.S. Pat. No. 5,998,178). It is desirable to remove the region in theilvGMEDA operon which is required for attenuation so that expression ofthe operon is not attenuated by the produced L-valine. Furthermore, theilvA gene in the operon is desirably disrupted so that threoninedeaminase activity is decreased.

Examples of L-valine-producing bacteria and parent strains which can beused to derive L-valine-producing bacteria also include mutants havingamino-acyl t-RNA synthetase mutations (U.S. Pat. No. 5,658,766). Anexample is E. coli VL1970, which has a mutation in the ileS geneencoding isoleucine tRNA synthetase. E. coli VL1970 was deposited at theRussian National Collection of Industrial Microorganisms (VKPM) (1Dorozhny proezd., 1 Moscow 117545, Russia) on Jun. 24, 1988 under theaccession number VKPM B-4411.

Furthermore, mutant strains which require lipoic acid for growth and/orlack H⁺-ATPase (WO96/06926) are also effective to deriveL-valine-producing bacteria.

Examples of L-valine-producing bacteria of coryneform bacteria include,for example, strains modified so that expression of a gene encoding anL-valine biosynthetic enzyme is enhanced. Examples of the L-valinebiosynthesis enzyme include enzymes encoded by genes present on theilvBNC operon, that is, acetohydroxy acid synthetase encoded by ilvBNand isomero-reductase encoded by ilvC (WO00/50624). Since the ilvBNCoperon is subject to expression regulation by L-valine and/orL-isoleucine and/or L-leucine, attenuation can be eliminated to avoidexpression suppression by L-valine that is produced.

Impartation of L-valine-producing ability to coryneform bacteria may beperformed by decreasing or eliminating activity of at least one kind ofenzyme which is involved in a metabolic pathway that decreases L-valineproduction. For example, decrease of the activity of threoninedehydratase involved in the L-leucine synthesis, or activity of anenzyme that involved in D-panthothenate synthesis is contemplated(WO00/50624).

Examples of methods for imparting L-valine-producing ability alsoinclude imparting resistance to an amino acid analogue or the like.

Examples include, for example, mutant strains which are auxotrophic forL-isoleucine and L-methionine, and resistant to D-ribose, purineribonucleoside or pyrimidine ribonucleoside, and have an ability toproduce L-valine (FERM P-1841, FERM P-29, Japanese Patent PublicationNo. 53-025034), mutant strains resistant to polyketides (FERM P-1763,FERM P-1764, Japanese Patent Publication No. 06-065314), and mutantstrains resistant to L-valine in a medium containing acetic acid as thesole carbon source and sensitive to pyruvic acid analogues(fluoropyruvic acid etc.) in a medium containing glucose as the solecarbon source (FERM BP-3006, BP-3007, Japanese Patent No. 3006929).

L-Isoleucine-Producing Bacteria

Examples of L-isoleucine producing bacteria and parent strains which canbe used to derive L-isoleucine-producing bacteria include, but are notlimited to, mutants which are resistant to 6-dimethylaminopurine(Japanese Patent Laid-open No. 5-304969), mutants which are resistant toisoleucine analogues such as thiaisoleucine and isoleucine hydroxamate,and mutants which are additionally resistant to DL-ethionine and/orarginine hydroxamate (Japanese Patent Laid-open No. 5-130882). Inaddition, recombinant strains transformed with genes encoding proteinsinvolved in L-isoleucine biosynthesis, such as threonine deaminase andacetohydroxate synthase, are also effective to deriveL-isoleucine-producing bacteria (Japanese Patent Laid-open No. 2-458, FR0356739, and U.S. Pat. No. 5,998,178).

Examples of L-isoleucine-producing strains of coryneform bacteriainclude the coryneform bacterium of which brnE gene coding for abranched chain amino acid excretion protein is amplified (JapanesePatent Laid-open No. 2001-169788), the coryneform bacterium impartedwith L-isoleucine-producing ability by protoplast fusion with anL-lysine-producing bacterium (Japanese Patent Laid-open No. 62-74293),the coryneform bacterium in which homoserine dehydrogenase is enhanced(Japanese Patent Laid-open No. 62-91193), the threonine hydroxameteresistant strain (Japanese Patent Laid-open No 62-195293), α-ketomalonicacid resistant strain (Japanese Patent Laid-open No. 61-15695), and themethyl lysine resistant strain (Japanese Patent Laid-open No. 61-15696).

L-Methionine-Producing Bacteria

Examples of L-methionine-producing bacteria and parent strains which canbe used to derive L-methionine producing bacteria include, but are notlimited to, L-threonine-auxotrophic mutant strain andnorleucine-resistant mutant strain (Japanese Patent Laid-open No.2000-139471). Furthermore, a methionine repressor-deficient strain andrecombinant strains transformed with genes encoding proteins involved inL-methionine biosynthesis such as homoserine transsuccinylase andcystathionine γ-synthase (Japanese Patent Laid-open No. 2000-139471) canalso be used as parent strains.

When the aforementioned L-amino acid-producing bacteria are bred by generecombination, the genes are not limited to genes having the geneticinformation described above or genes having known sequences, but alsoinclude genes having conservative mutations, such as homologues orartificially modified genes, can also be used so long as the functionsof the encoded proteins are not degraded. That is, they may be genesencoding a known amino acid sequence containing one or moresubstitutions, deletions, insertions, additions or the like of one orseveral amino acid residues at one or several positions.

Although the number of the “one or several” amino acid residues maydiffer depending on the position in the three-dimensional structure orthe types of amino acid residues of the protein, specifically, it may be1 to 20, 1 to 10, or even 1 to 5. The conservative mutation is amutation wherein substitution takes place mutually among Phe, Trp, andTyr, if the substitution site is an aromatic amino acid; among Leu, Ileand Val, if it is a hydrophobic amino acid; between Gln and Asn, if itis a polar amino acid; among Lys, Arg and His, if it is a basic aminoacid; between Asp and Glu, if it is an acidic amino acid; and betweenSer and Thr, if it is an amino acid having a hydroxyl group. Theconservative mutation is typically a conservative substitution, andsubstitutions considered conservative substitutions include,specifically, substitution of Ser or Thr for Ala, substitution of Gln,His or Lys for Arg, substitution of Glu, Gln, Lys, His or Asp for Asn,substitution of Asn, Glu or Gln for Asp, substitution of Ser or Ala forCys, substitution of Asn, Glu, Lys, His, Asp or Arg for Gln,substitution of Gly, Asn, Gln, Lys or Asp for Glu, substitution of Profor Gly, substitution of Asn, Lys, Gln, Arg or Tyr for His, substitutionof Leu, Met, Val or Phe for Ile, substitution of Ile, Met, Val or Phefor Leu, substitution of Asn, Glu, Gln, His or Arg for Lys, substitutionof Ile, Leu, Val or Phe for Met, substitution of Trp, Tyr, Met, Ile orLeu for Phe, substitution of Thr or Ala for Ser, substitution of Ser orAla for Thr, substitution of Phe or Tyr for Trp, substitution of His,Phe or Trp for Tyr, and substitution of Met, Ile or Leu for Val. Theaforementioned amino acid substitutions, deletions, insertions,additions, inversions or the like may be a result of anaturally-occurring mutation or a variation due to an individualdifference or difference of species of a microorganism from which thegenes are derived (mutant or variant). Such genes can be obtained by,for example, modifying a known nucleotide sequence of a gene bysite-specific mutagenesis so that the amino acid residues at thespecific sites of the encoded protein include substitutions, deletions,insertions, or additions of amino acid residues.

Furthermore, such genes having conservative mutation(s) as describedabove may encode a protein having a homology of 80% or more, 90% ormore, 95% or more, or even 97% or more, to the entire encoded amino acidsequence and have a function equivalent to that of the wild-typeprotein.

Moreover, codons in the gene sequences may be replaced with other codonswhich are easily used in the host into which the genes are introduced.

The genes having conservative mutation(s) may be obtained by methodsusually used in mutagenesis treatments such as treatments withmutagenesis agents.

Furthermore, the genes may be a DNA which can hybridize with acomplementary sequence of a known gene sequence or a probe which can beprepared from the complementary sequence under stringent conditions andencodes a protein having a function equivalent to that of the known geneproduct. The “stringent conditions” can be conditions under which aso-called specific hybrid is formed, and a non-specific hybrid is notformed. Examples of the stringent conditions include those under whichhighly homologous DNAs hybridize to each other, for example, DNAs notless than 80% homologous, not less than 90% homologous, not less than95% homologous, or even not less than 97% homologous, hybridize to eachother, and DNAs less homologous than the above do not hybridize to eachother, or conditions of washing once, or 2 or 3 times, at a saltconcentration and temperature corresponding to washing typical ofSouthern hybridization, i.e., 1×SSC, 0.1% SDS at 60° C.; 0.1×SSC, 0.1%SDS at 60° C.; or even 0.1×SSC, 0.1% SDS at 68° C.

As the probe, a part of the sequence which is complementary to the genecan also be used. Such a probe can be prepared by PCR usingoligonucleotides prepared on the basis of the known gene sequence asprimers and a DNA fragment containing the nucleotide sequences as atemplate. For example, when a DNA fragment having a length of about 300bp is used as the probe, the washing conditions of hybridization may be50° C., 2×SSC and 0.1% SDS.

The aforementioned descriptions concerning gene homologues andconservative mutations are similarly applied to the aforementionedlipase genes.

<3> Method for Producing L-Amino Acid

The method for producing an L-amino acid includes the steps of preparinga processed product of a microalga, which promotes production andaccumulation of the L-amino acid by a bacterium having an ability toproduce the L-amino acid, by culturing the microalga in a medium, andprocessing the culture at a midtemperature, culturing the bacterium in amedium containing the processed product of the microalga to produce andaccumulate the L-amino acid in the culture, and collecting the L-aminoacid from the culture. Since the processed product is a reaction mixturein which the culture of the microalga is processed at a midtemperatureor a product obtained by further subjecting the reaction mixture toextraction or fractionation and/or another treatment as described above,it is considered that the processed product contains organic substancesproduced from organic substances produced by the microalga by thereaction at a midtemperature, or organic substances obtained by furtherconversion of the foregoing organic substance by another treatment.

The processed product (henceforth also referred to as “midtemperature-processed product”) can be a carbon source, and in thiscase, fatty acids, glucose and glycerol are included as the carbonsource.

The expression “as a carbon source” mentioned above means that theprocessed product can substantially contribute carbon constituting cellcomponents and L-amino acids in proliferation of the bacterium andL-amino acid production. If bacterial growth or L-amino acid productionand accumulation are more favorable in culture in a medium to which themidtemperature-processed product is added compared with culture in amedium to which the moderate temperature-processed product is not added,the midtemperature-processed product is estimated to be a carbon source.The medium may contain only the midtemperature-processed product as acarbon source, or may contain other carbon sources.

For the method, batch culture, fed-batch culture and continuous culturemay be used. The moderate temperature-processed product in the mediummay be present in a starting medium or feed medium, or may be present inboth.

The fed-batch culture can refer to a culture method in which a medium iscontinuously or intermittently fed into a culture vessel, and the mediumis not extracted until the end of culture. A continuous culture can meana method in which a medium is continuously or intermittently fed into aculture vessel, and the medium is extracted from the vessel (usually ina volume equivalent to the volume of fed medium) at the same time. Thestarting medium can mean the medium used in batch culture, the fed-batchculture, or continuous culture before feeding the feed medium (mediumused at the time of the start of the culture), and feed medium can meana medium which is supplied to a fermentation tank in the fed-batchculture or continuous culture. The batch culture means a method in whichfresh medium is prepared for every culture, and a strain is inoculatedinto the medium, which medium is not changed until harvest.

The midtemperature-processed product may be used at any concentration solong as it is used at a concentration suitable for producing an L-aminoacid. Concentrations of the components of the midtemperature-processedproduct are as follows. Concentration of glucose as a saccharificationproduct of starches in the medium can be about 0.05 to 50 w/v %, about0.1 to 40 w/v %, or even about 0.2 to 20 w/v %. As for the amount ofglycerol and fatty acids as a hydrolysate of fat or oil, about 0.01 to10 w/v %, about 0.02 to 5 w/v %, or even about 0.05 to 2 w/v % can bepresent in the medium. The midtemperature-processed product may beindependently used, or may also be used in combination with other carbonsources such as glucose, fructose, sucrose, blackstrap molasses, andstarch hydrolysate. In this case, although the midtemperature-processedproduct and other carbon sources may be mixed at an arbitrary ratio, itis desirable that the ratio of the moderate temperature-processedproduct in the carbon source is 10% by weight or more, 50% by weight ormore, 70% by weight or more. Other carbon sources can includesaccharides such as glucose, fructose, sucrose, lactose, galactose,blackstrap molasses, starch hydrolysate, and a sugar solution obtainedby hydrolysis of biomass, alcohols such as ethanol and glycerol, andorganic acids such as fumaric acid, citric acid, and succinic acid.

Themid-temperature-processed product may be present at a certainconstant concentration throughout the culture period, it may be addedonly to the feed medium or the starting medium, or if other carbonsources are sufficient, there may be a period where the moderatetemperature-processed product temporarily runs short. The term“temporarily” means that, for example, the moderatetemperature-processed product may run short for a period correspondingto 10%, 20%, or 30% at most, of the entire fermentation period. Such acase as described above where the concentration of themidtemperature-processed product may temporarily become 0 is included inthe scope of the expression “the medium contains the moderatetemperature-processed product as a carbon source”, so long as there is aperiod of culture in a medium containing the midtemperature-processedproduct.

As the medium to be used, media conventionally used in the production ofL-amino acids by fermentation using microorganisms can be used, providedthat the medium contains the moderate temperature-processed product.That is, conventional media containing, besides a carbon source, anitrogen source, inorganic ions, and optionally other organic componentsas required may be used. As the nitrogen source, inorganic ammoniumsalts such as ammonium sulfate, ammonium chloride, ammonium phosphate,ammonium acetate, and urea, nitrates, organic nitrogen such as soybeanhydrolysate, ammonia gas, aqueous ammonia, and so forth may be used.Furthermore, peptone, yeast extract, meat extract, malt extract, cornsteep liquor, soybean hydrolysate and so forth can also be utilized. Themedium may contain one or more types of these nitrogen sources. Thesenitrogen sources can also be used for both the starting medium and thefeed medium. Furthermore, the same nitrogen source can be used for boththe starting medium and the feed medium, or the nitrogen source of thefeed medium may be different from that of the starting medium.

The medium can contain a phosphoric acid source and a sulfur source inaddition to the carbon source and the nitrogen source. As the phosphoricacid source, potassium dihydrogenphosphate, dipotassiumhydrogenphosphate, phosphate polymers such as pyrophosphoric acid and soforth can be utilized. Although the sulfur source may be any substancecontaining sulfur atoms, sulfuric acid salts such as sulfates,thiosulfates and sulfites, and sulfur-containing amino acids such ascysteine, cystine and glutathione are desirable, and ammonium sulfate isespecially desirable.

Furthermore, the medium may contain a growth promoting factor (nutrienthaving a growth promoting effect) in addition to the aforementionedcomponents. As the growth promoting factor, trace metals, amino acids,vitamins, nucleic acids as well as peptone, casamino acid, yeastextract, soybean protein degradation product and so forth containing theforegoing substances can be used. Examples of the trace metals includeiron, manganese, magnesium, calcium and so forth. Examples of thevitamins include vitamin B₁, vitamin B₂, vitamin B₆, nicotinic acid,nicotinamide, vitamin B₁₂ and so forth. These growth promoting factorsmay be contained in the starting medium or the feed medium.

Furthermore, when an auxotrophic mutant that requires an amino acid orthe like for growth thereof is used, a required nutrient can besupplemented to the medium. In particular, since the L-lysinebiosynthetic pathway is enhanced and L-lysine degrading ability is oftenattenuated in L-lysine-producing bacteria that can be used for thepresent invention as described below, one or more types of substancesselected from L-threonine, L-homoserine, L-isoleucine and L-methionineare particular examples. The starting medium and the feed medium mayhave the same or different medium composition. Furthermore, the startingmedium and the feed medium may have the same or different sulfurconcentration. Furthermore, when the feed medium is fed at multiplestages, the compositions of the feed media fed at the stages may be thesame or different.

In addition, the medium used in the present invention may be either anatural medium or synthetic medium, so long as it contains a carbonsource, a nitrogen source, and other components as required.

The moderate temperature-processed product may contain components usedfor amino acids in addition to the carbon source. The nitrogen sourceand other components in the medium used in the present invention can bereduced compared with usual media as required.

The culture can be performed for 1 to 7 days under aerobic conditions.The culture temperature is 20 to 45° C., 24 to 45° C., or 33 to 42° C.The culture can be performed as aeration culture, with controlling theoxygen concentration to be about 5 to 50%, or about 10%, of thesaturation concentration. Furthermore, pH can be controlled to be 5 to 9during the culture. For adjusting pH, inorganic or organic acidic oralkaline substances, such as calcium carbonate, ammonia gas, and aqueousammonia, can be used.

If culture is performed under such conditions as described above forabout 10 to 120 hours, a marked amount of L-amino acid is accumulated inthe culture medium. Although the concentration of L-amino acidaccumulated is not limited so long as it enables isolation andcollection of the L-amino acid from the medium or cells, it can be 1 g/Lor higher, 50 g/L or higher, or even 100 g/L or higher.

When a basic amino acid such as L-lysine is produced, the production maybe performed by a method in which fermentation is performed bycontrolling pH of the medium during culture to be 6.5 to 9.0 and pH ofthe medium at the end of the culture to be 7.2 to 9.0 and controllingthe pressure in the fermentation tank to be positive during the culture,or by supplying carbon dioxide gas or a mixed gas containing carbondioxide gas to the medium to provide a culture period where the mediumcontains 2 g/L or 20 mM or more of bicarbonate ions and/or carbonateions, so that these bicarbonate ions and/or carbonate ions serve ascounter ions of cations mainly a basic amino acid, and the objectivebasic amino acid is then collected (Japanese Patent Laid-open No.2002-65287, U.S. Patent Published Application No. 2002/0025564, EP1813677 A).

Further, in L-glutamic acid fermentation, the culture can be performedwith precipitating L-glutamic acid in the medium by using a liquidmedium adjusted to have a condition under which L-glutamic acid isprecipitated. The condition under which L-glutamic acid is precipitatedis, for example, pH 5.0 to 4.0, pH 4.5 to 4.0, pH 4.3 to 4.0, or pH 4.0(European Patent Laid-open No. 1078989).

The L-amino acid can be collected from the culture medium by acombination of known methods such as an ion exchange resin method andprecipitation method. When the L-amino acid accumulates in the cells,the cells can be disrupted with, for example, supersonic waves or thelike, and the L-amino acid can be collected by the ion exchange resinmethod or the like from the supernatant obtained by removing the cellsfrom the cell-disrupted suspension by centrifugation. The L-amino acidto be collected may be a free L-amino acid, or may be a salt such assulfate, hydrochloride, carbonate, ammonium salt, sodium salt, andpotassium salt.

The L-amino acid composition may contain bacterial cells, mediumcomponents, moisture, and by-product metabolites of the bacterium inaddition to the objective L-amino acid. Purity of the collected L-aminoacid is 50% or higher, 85% or higher, or 95% or higher (Japanese PatentNo. 1214636, U.S. Pat. Nos. 5,431,933, 4,956,471, 4,777,051, 4,946,654,5,840,358, 6,238,714, U.S. Patent Published Application No.2005/0025878).

EXAMPLES

Hereafter, the present invention will be explained more specificallywith reference to the following non-limiting examples. In the examples,the Chlorella kessleri 11H (UTEX 263) and Nannochloris sp. UTEX LB 1999strains were obtained from the University of Texas at Austin, TheCulture Collection of Algae (UTEX) (1 University Station A6700, Austin,Tex. 78712-0183, USA).

Example 1 Culture of Microalga Chlorella kessleri 11H Strain

The Chlorella kessleri 11H strain was cultured at 30° C. and a lightintensity of 7,000 lux (culture apparatus: CL-301, TOMY) for 7 days withshaking in 100 mL of the 0.2× Gamborg's B5 medium (NIHON PHARMACEUTICAL)contained in a 500 mL-volume conical flask, and the resultant culturewas used as a preculture. The preculture in a volume of 30 mL was addedto 1.5 L of the 0.2×Gamborg's B5 medium contained in a 5 L-volume minijar fermenter (ABLE), and culture was performed at a culture temperatureof 30° C. and a light intensity of 20,000 lux for 14 days with blowing500 mL/minute of a mixed gas of air and 3% CO₂ into the medium. As thelight source, white light from a fluorescent lamp was used.

(0.2×Gamborg's B5 medium)

KNO₃ 500 mg/L MgSO₄•7H₂O 50 mg/L NaH₂PO₄•H₂O 30 mg/L CaCl₂•2H₂O 30 mg/L(NH₄)₂SO₄ 26.8 mg/L Na₂—EDTA 7.46 mg/L FeSO₄•7H₂O 5.56 mg/L MnSO₄•H₂O 2mg/L H₃BO₃ 0.6 mg/L ZnSO₄•7H₂O 0.4 mg/L KI 0.15 mg/L Na₂MoO₂•2H₂O 0.05mg/L CuSO₄•5H₂O 0.005 mg/L CoCl₂•6H₂O 0.005 mg/L

The medium was sterilized by autoclaving at 120° C. for 15 minutes.

Example 2 Decomposition of Oils and Fats and Starch Derived from Alga byProcessing at Midtemperature

The alga bodies contained in 9 L of the culture medium obtained byculture according to the method of Example 1 were precipitated bycentrifugation, and stored at −80° C. for 24 hours. To the precipitate,1 L of the culture supernatant was added again, and 2 ml of thesuspension was put into a test tube, and incubated at 50° C. and 150 rpmfor 18 hours. The above procedure was also performed for a group inwhich 10 units of amyloglucosidase (Sigma Aldrich, A-9228) was added tothe suspension. Each sample was centrifuged to separate precipitate andsupernatant, and then organic substances contained in them weremeasured. The results of the measurements are shown in Table 1. In thesample processed at a mid-temperature, the amounts of oils and fats andstarch decreased, whereas the amounts of fatty acids and glycerol orglucose, which are decomposition products of oils and fats or starch,increased as compared with the unprocessed sample. Further, the fattyacids localized in the precipitate, whereas glucose and glycerol werefound in the supernatant. Furthermore, with the amyloglucosidasetreatment during the processing at a midtemperature, the glucoseproduction amount was increased.

TABLE 1 Processed at Organic substance Unprocessed (g/L) midtemperature(g/L) Oil and fat (precipitate) 6.6 2.4 Starch (precipitate) 2.5 0.5Glycerol (supernatant) 0.6 1.3 Fatty acid (precipitate) 1.6 7.2 Glucose(supernatant) 0 1.3 Glucose (supernatant) + 2.6 amyloglucosidasetreatment

Example 3 Production of Fatty Acid from Alga Bodies

The alga bodies contained in 9 L of the culture medium obtained byculture according to the method of Example 1 were precipitated bycentrifugation, and stored at −80° C. for 24 hours. To the precipitate,500 mL of the culture supernatant was added again, and 250 ml of thesuspension was put into a 500 mL-volume jar fermenter (ABLE), andincubated at 50° C. and 100 rpm for 18 hours. The obtained sample wascentrifuged for precipitation, and the precipitate was suspended in 40mL of ultrapure water. To 12.5 ml of the suspension, 12.5 ml ofultrapure water and 25 ml of 0.2 N NaOH were added, and then the mixturewas stirred at 95° C. for 3 hours. The obtained fatty acid extract wasfiltered by using filter paper. Fatty acid concentration of the extractwas measured, and each was used as a carbon source for amino acidfermentation.

Example 4 L-Lysine Production Culture Using Fatty Acids Derived fromAlga as a Carbon Source

<4-1> Construction of fadR-Deficient L-Lysine-Producing Escherichia coliStrain

The transcription factor FadR which controls fatty acid metabolism ofEscherichia coli is encoded by the fadR gene (SEQ ID NO: 15, DiRusso, C.C. et al., 1992, J. Biol. Chem., 267:8685-8691). The parent strain usedfor the gene disruption in this example was the WC196ΔcadAΔldc straindescribed in International Publication WO2006/078039. This strain is anL-lysine-producing strain of Escherichia coli.

Deletion of the fadR gene coding for the transcription factorcontrolling fatty acid metabolism was performed by the method called“Red-driven integration”, first developed by Datsenko and Wanner(Datsenko, K. A. and Wanner, B. L., 2000, Proc. Natl. Acad. Sci. USA,97:6640-6645), and an excision system derived from λ phage (Cho E. H.,Gumport R. I., and Gardner J. F., 2002, J. Bacteriol., 184:5200-5203).According to the “Red-driven integration” method, using a PCR productobtained by using synthetic oligonucleotides in which a part of a targetgene is designed on the 5′ side, and a part of antibiotic resistancegene is designed on the 3′ side, respectively, as primers, agene-disrupted strain can be constructed in one step. By further usingthe excision system derived from λ phage in combination, the antibioticresistance gene incorporated into the gene-disrupted strain can beremoved (Japanese Patent Laid-open No. 2005-058227, WO2005/010175).

As the template for PCR, the plasmid pMW118-attL-kan-attR (JapanesePatent Laid-open No. 2005-058227, WO2005/010175) was used.pMW118-attL-kan-attR is a plasmid obtained by inserting the attachmentsites of λ phage, the attL and attR genes, and the kan gene as anantibiotic resistance gene into pMW118 (Takara Bio), and they areinserted in the order of attL-kan-attR.

PCR was performed by using the synthetic oligonucleotides shown in SEQID NOS: 16 and 17 as primers, which had sequences corresponding to theboth ends of the attL and attR at the 3′ ends of the primers and asequence corresponding to a part of the fadR gene as the objective geneat the 5′ ends of the primers.

The amplified PCR product was purified on agarose gel, and introducedinto the Escherichia coli WC196ΔcadAΔldcC strain containing the plasmidpKD46 having temperature sensitive replication ability byelectroporation. The plasmid pKD46 (Datsenko, K. A. and Wanner, B. L.,2000, Proc. Natl. Acad. Sci. USA., 97:6640-6645) contains the DNAfragment of 2154 nucleotides in total of λ phage (GenBank/EMBL accessionnumber J02459, 31088th to 33241st nucleotides) containing the genescoding for the Red recombinase of ?Red homologous recombination system(γ, β and exo genes) controlled by the arabinose inducible ParaBpromoter. The plasmid pKD46 is required in order to incorporate the PCRproduct into the chromosome of the WC196ΔcadAΔldcC strain.

Competent cells for electroporation were prepared as follows. That is,the Escherichia coli WC196 strain cultured overnight at 30° C. in the LBmedium (10 g/L of tryptone, 5 g/L of yeast extract, 10 g/L of NaCl)containing 100 mg/L of ampicillin was diluted 100 times with 5 mL of theLB medium containing ampicillin (100 mg/L) and L-arabinose (1 mM). Thestrain was proliferated in the diluted culture at 30° C. with aerationuntil the OD600 reached about 0.6, then the culture was concentrated 100times, and the cells were washed three times with 10% glycerol andthereby made ready for use in electroporation. Electroporation wasperformed by using 70 μt, of the competent cells and about 100 ng of thePCR product. To the cells after the electroporation were added 1 mL ofthe SOC medium (Sambrook, J., and Russell, D. W., 2001, MolecularCloning A Laboratory Manual/Third Edition, Cold Spring Harbor LaboratoryPress, New York), and the cells were cultured at 37° C. for 1 hour, andthen cultured at 37° C. on the LB agar medium containing Km (kanamycin,40 mg/L) as plate culture to select a Km-resistant recombinant. Then, toremove the pKD46 plasmid, the recombinant was subcultured twice at 42°C. on the LB agar medium containing Km, and the ampicillin resistance ofthe obtained colonies was examined to obtain an ampicillin-sensitivestrain from which the pKD46 was eliminated.

Deletion of the fadR gene in the mutant identified with thekanamycin-resistant gene was confirmed by PCR. The fadR-deficient strainobtained was designated WC196ΔcadAΔldcCΔfadR::att-kan strain.

Then, to remove the att-kan gene which had been introduced into the fadRgene, a helper plasmid, pMW-intxis-ts (Japanese Patent Laid-open No.2005-058227, WO2005/010175) was used. pMW-intxis-ts is a plasmidcarrying a gene coding for λ phage integrase (Int) and a gene coding forexcisionase (Xis), and having temperature sensitive replication ability.

The competent cells of the WC196ΔcadAΔldcCΔfadR::att-kan strain obtainedas described above were prepared in a conventional manner, transformedwith the helper plasmid pMW-intxis-ts, and cultured at 30° C. on a plateof the LB agar medium containing 100 mg/L of ampicillin to select anampicillin-resistant strain.

Then, to remove the pMW-intxis-ts plasmid, the ampicillin-resistanttransformant was subcultured twice at 42° C. on the LB agar medium,ampicillin resistance and kanamycin resistance of the obtained colonieswere examined to obtain a kanamycin and ampicillin-sensitive strainwhich was anfadR-disrupted strain from which the att-kan andpMW-intxis-ts were eliminated. This strain was designatedWC196ΔcadAΔldcCΔfadR strain.

The WC196ΔcadAΔldcCΔfadR strain was transformed with the plasmid pCABD2(WO95/16042) for lysine production carrying the dapA, dapB, lysC, andddh genes in a conventional manner to obtain WC196ΔcadAΔldcCΔfadR/pCABD2strain.

The strain prepared above was cultured at 37° C. in the LB mediumcontaining 25 mg/L of streptomycin until OD₆₀₀ became about 0.6, then a40% glycerol solution in the same volume as that of the culture mediumwas added to the medium, and the mixture was stirred, then divided intoappropriate volumes, and stored at −80° C. as glycerol stocks.

<4-2> L-Lysine Production Culture by L-Lysine-Producing Escherichia coliStrain Using Fatty Acids Derived from Alga as a Carbon Source

As an L-lysine-producing bacterium, the Escherichia coliWC196ΔcadAΔldcCΔfadR/pCABD2 strain constructed in <4-1> mentioned above(this strain is referred to as “WC196LCR/pCABD2”) was used. The glycerolstock of the WC196LCR/pCABD2 strain was thawed, 100 μL of the thawedstock was uniformly applied to an L-plate containing 25 mg/L ofstreptomycin, and culture was performed at 37° C. for 20 hours. About ⅛of the cells obtained from one plate were inoculated into 20 mL of thefermentation medium described below and containing 25 mg/L ofstreptomycin, which was contained in a Sakaguchi flask, and cultured at37° C. for 48 hours on a reciprocally shaking culture apparatus. As thesample derived from the alga serving as the carbon source, Tween 80 wasadded at a concentration of 1% to the fatty acid extract derived fromthe alga, and the mixture was stirred, then adjusted to pH 7.0 with 1 NHCl, autoclaved at 120° C. for 20 minutes, and used as a carbon sourcesolution. The medium composition used for the culture is shown below.

[L-Lysine Production Medium for Escherichia Bacteria]

Reagent oleic acid or fatty acids 9.9 g/L derived from alga (NH₄)₂SO₄ 24g/L KH₂PO₄ 1.0 g/L MgSO₄•7H₂O 1.0 g/L FeSO_(4•)7H₂O 0.01 g/LMnSO_(4•)4H₂O 0.01 g/L Yeast extract 2.0 g/L PIPES (pH 7.0) 20 g/L

The medium was adjusted to pH 7.0 with KOH, and autoclaved at 110° C.for 10 minutes, provided that the carbon source, MgSO₄.7H₂O, and thePIPES buffer (pH 7.0) were separately sterilized, and then mixed.

After 24 hours, the amount of L-lysine in the culture supernatant wasmeasured with Biotech Analyzer AS310 (Sakura Seiki). The degree of thegrowth in this medium was determined by measuring the live cell count.Averages of the results of the culture performed in duplicate are shownin Table 2. Favorable L-lysine production was confirmed with the fattyacids derived from the alga, and the fatty acids derived from the algaprovided superior L-lysine accumulation as compared with the reagentoleic acid.

TABLE 2 Live cell L-Lysine Culture count concentration Carbon sourcetime (h) (×10⁸) (g/L) Reagent oleic acid (9.9 g/L) + 0.6% 24 15.2 2.8Tween 80 fatty acids derived from alga) (9.9 24 14.4 3.1 g/L) + 0.6%Tween 80

Example 5 Culture of Microalga Chlorella kessleri 11H Strain

The Chlorella kessleri 11H strain was cultured at 30° C. and a lightintensity of 7,000 lux (culture apparatus: CL-301, TOMY) for 7 days withshaking in 100 mL of the 0.2×Gamborg's B5 medium (NIHON PHARMACEUTICAL)contained in a 500 mL-volume conical flask, and the resultant culturewas used as a preculture. As the light source, white light from afluorescent lamp was used. The preculture in a volume of 6 mL was addedto 300 mL of the 0.2×Gamborg's B5 medium contained in a 500 mL-volumemedium bottle, and culture was performed at a culture temperature of 30°C. and a light intensity of 7,000 lux for 12 days with blowing 250mL/minute of a mixed gas of air and 3% CO₂ into the medium.

(0.2×Gamborg's B5 Medium)

KNO₃ 500 mg/L MgSO₄•7H₂O 50 mg/L NaH₂PO₄•H₂O 30 mg/L CaCl₂•2H₂O 30 mg/L(NH₄)₂SO₄ 26.8 mg/L Na₂—EDTA 7.46 mg/L FeSO₄•7H₂O 5.56 mg/L MnSO₄•H₂O 2mg/L H₃BO₃ 0.6 mg/L ZnSO₄•7H₂O 0.4 mg/L KI 0.15 mg/L Na₂MoO₂•2H₂O 0.05mg/L CuSO₄•5H₂O 0.005 mg/L CoCl₂•6H₂O 0.005 mg/L

The medium was sterilized by autoclaving at 120° C. for 15 minutes.

Example 6 Temperature Condition for Mid-Temperature Processing of Alga

The culture medium obtained in Example 5 in a volume of 125 ml was putinto a 500-mL volume jar fermenter (ABLE), and incubated at varioustemperatures and 150 rpm for 18 hours. Each obtained sample wascentrifuged, and the amount of fatty acid in the obtained precipitatewas measured. The measurement results are shown in FIG. 1. The fattyacid amount increased with the processing at 40° C., and markedlyincreased with the processing at 45° C., compared with the sample notprocessed.

Example 7 Culture of Microalga Nannochloris Sp.

The Nannochloris sp. UTEX LB 1999 strain was cultured at 30° C. and alight intensity of 7,000 lux (culture apparatus: CL-301, TOMY) for 8days with shaking in 10 mL of the Daigo IMK medium (NIHONPHARMACEUTICAL) contained in a 50 mL-volume conical flask. As the lightsource, white light from a fluorescent lamp was used. As the sea watercomponent of the Daigo IMK medium, Daigo Artificial Sea Water SP (NIHONPHARMACEUTICAL), which is artificial sea water, was used.

(Daigo IMK Medium)

NaNO₃ 200 mg/L Na₂HPO₄ 1.4 mg/L K₂HPO₄ 5 mg/L NH₄Cl 2.68 mg/L Fe—EDTA5.2 mg/L Mn—EDTA 0.332 mg/L Na₂—EDTA 37.2 mg/L ZnSO₄•7H₂O 0.023 mg/LCoSO₄•7H₂O 0.014 mg/L Na₂MoO₄•2H₂O 0.0073 mg/L CuSO₄•5H₂O 0.0025 mg/LH₂SeO₃ 0.0017 mg/L Thiamin-HCl 0.2 mg/L Biotin 0.0015 mg/L Vitamin B120.0015 mg/L MnCl₂•4H₂O 0.18 mg/L Daigo Artificial Sea Water SP 36 g/L

The medium was adjusted to pH 8.0 with 1 N NaOH, and then sterilized byautoclaving at 120° C. for 10 minutes.

Example 8 Midtemperature Processing of Nannochloris Sp.

The culture medium in a volume of 0.5 ml was put into a 1.5 ml-volumeEppendorf tube, and incubated at 50° C. and 1000 rpm for 20 hours. Eachsample was centrifuged, and the amount of fatty acids in the obtainedprecipitate was measured. The measurement results are shown in FIG. 2.Since the amount of fatty acids markedly increased with the processingat 50° C. compared with no processing, it was confirmed that fatty acidswere generated also in Nannochloris sp. by the moderate temperatureprocessing.

Example 9 Culture of Microalga Chlorella kessleri 11H Strain

The Chlorella kessleri 11H strain was cultured at 30° C. and a lightintensity of 7,000 lux (culture apparatus: CL-301, TOMY) for 7 days in300 mL of the 0.2×Gamborg's B5 medium (NIHON PHARMACEUTICAL) containedin a 500 mL-volume medium bottle with blowing 250 mL/minute of a mixedgas of air and 3% CO₂ into the medium, and the resultant culture wasused as a preculture. As the light source, white light from afluorescent lamp was used. The preculture in a volume of 6 mL was addedto 300 mL of the 0.2×Gamborg's B5 medium contained in a 500 mL-volumemedium bottle, and culture was performed at a culture temperature of 30°C. and a light intensity of 7,000 lux for 12 days with blowing 250mL/minute of a mixed gas of air and 3% CO₂ into the medium.

(0.2×Gamborg's B5 medium)

KNO₃ 500 mg/L MgSO₄•7H₂O 50 mg/L NaH₂PO₄•H₂O 30 mg/L CaCl₂•2H₂O 30 mg/L(NH₄)₂SO₄ 26.8 mg/L Na₂—EDTA 7.46 mg/L FeSO₄•7H₂O 5.56 mg/L MnSO₄•H₂O 2mg/L H₃BO₃ 0.6 mg/L ZnSO₄•7H₂O 0.4 mg/L KI 0.15 mg/L Na₂MoO₂•2H₂O 0.05mg/L CuSO₄•5H₂O 0.005 mg/L CoCl₂•6H₂O 0.005 mg/L

The medium was sterilized by autoclaving at 120° C. for 15 minutes.

Example 10 Time Course of Fatty Acid Generation Rate in MidtemperatureProcessing of Algae at Various Temperatures

The culture medium obtained in Example 9 was adjusted to pH 4.5 with 1 NHCl, and 1 ml of the medium was put into a 1.5 ml-volume Eppendorf tube,and incubated at various temperatures and 1000 rpm for various times.Each obtained sample was centrifuged, and the amount of fatty acid inthe obtained precipitate was measured. The measurement results are shownin FIG. 3. The relative fatty acid production rate was calculated as therate to the amount of fatty acids produced when oils and fats extractedfrom the untreated alga bodies with an organic solvent were completelydecomposed, which was taken as 100. The fatty acid amount increasedafter 1 hour at a temperature of 55° C. or higher, and it markedlyincreased after 4 to 6 hours at a temperature of 50 to 52° C.

Example 11 pH Condition of Alkali Treatment for Fatty Acid Extraction

The culture medium obtained in Example 9 was centrifuged, and theculture supernatant was added to the precipitate to prepare a 20-foldconcentrate of the medium. The concentrate was adjusted to pH 4.5 with 1N HCl, and 1 ml of the concentrate was put into a 1.5 ml-volumeEppendorf tube, and incubated at 52° C. and 1000 rpm for 14 hours. Theobtained sample was adjusted to various pH values with 3 N NaOH, andextracted at 90° C. and 1000 rpm for 3 hours, and the amount of fattyacid in each sample was measured. The measurement results are shown inFIG. 4. The relative fatty acid collection rate was calculated as therate to the amount of fatty acids produced when oils and fats extractedfrom the untreated alga bodies with an organic solvent were completelydecomposed, which was taken as 100. The fatty acids were slightlyextracted at pH 10.5, and the extracted fatty acid amount increased atpH 11.5, and markedly increased at pH 12.5.

Example 12 Temperature Condition of Alkali Treatment for Fatty AcidExtraction

The culture medium obtained in Example 9 was centrifuged, and theculture supernatant was added to the precipitate to prepare a 20-foldconcentrate of the medium. The concentrate was adjusted to pH 4.5 with 1N HCl, and 1 ml of the concentrate was put into a 1.5 ml-volumeEppendorf tube, and incubated at 52° C. and 1000 rpm for 14 hours. Theobtained sample was adjusted to pH 12.5 with 3 N NaOH, and extracted atvarious temperatures and 1000 rpm for 3 hours, and the amount of fattyacid in each sample was measured. The measurement results are shown inFIG. 5. The relative fatty acid collection rate was calculated as therate to the amount of fatty acids produced when oils and fats extractedfrom the untreated alga bodies with an organic solvent were completelydecomposed, which was taken as 100. Extraction of the fatty acids wasconfirmed at 60° C., and the fatty acid amount increased with increaseof the temperature, and reached the maximum at 90° C.

Example 13 Time of Alkali Treatment for Fatty Acid Extraction

The culture medium obtained in Example 9 was centrifuged, and theculture supernatant was added to the precipitate to prepare a 20-foldconcentrate of the medium. The concentrate was adjusted to pH 4.5 with 1N HCl, and 1 ml of the concentrate was put into a 1.5 ml-volumeEppendorf tube, and incubated at 52° C. and 1000 rpm for 14 hours. Theobtained sample was adjusted to pH 12.5 with 3 N NaOH, and extracted at90° C. and 1000 rpm for various times, and the amount of fatty acid ineach sample was measured. The measurement results are shown in FIG. 6.The relative fatty acid collection rate was calculated as the rate tothe amount of fatty acids produced when oils and fats extracted from theuntreated alga bodies with an organic solvent were completelydecomposed, which was taken as 100. The fatty acid amount increased withthe treatment for 30 minutes, and markedly increased as the processingtime became longer, i.e., the processing time was extended to 60 minutesand 90 minutes. After 120 minutes, the fatty acid amount did not furtherincrease.

Example 14 Culture of Microalga Chlorella kessleri 11H Strain

The Chlorella kessleri 11H strain was cultured at 30° C. and a lightintensity of 7,000 lux (culture apparatus: CL-301, TOMY) for 7 days in400 mL of the 0.2×Gamborg's B5 medium (NIHON PHARMACEUTICAL) containedin a 500 mL-volume medium bottle with blowing 250 mL/minute of a mixedgas of air and 3% CO₂ into the medium, and the resultant culture wasused as a preculture. As the light source, white light from afluorescent lamp was used. The preculture in a volume of 8 mL was addedto 400 mL of the 0.2×Gamborg's B5 medium contained in a 500 mL-volumemedium bottle, and culture was performed at a culture temperature of 30°C. and a light intensity of 7,000 lux for 12 days with blowing 250mL/minute of a mixed gas of air and 3% CO₂ into the medium.

(0.2×Gamborg's B5 medium)

KNO₃ 500 mg/L MgSO₄•7H₂O 50 mg/L NaH₂PO₄•H₂O 30 mg/L CaCl₂•2H₂O 30 mg/L(NH₄)₂SO₄ 26.8 mg/L Na₂—EDTA 7.46 mg/L FeSO₄•7H₂O 5.56 mg/L MnSO₄•H₂O 2mg/L H₃BO₃ 0.6 mg/L ZnSO₄•7H₂O 0.4 mg/L KI 0.15 mg/L Na₂MoO₂•2H₂O 0.05mg/L CuSO₄•5H₂O 0.005 mg/L CoCl₂•6H₂O 0.005 mg/L

The medium was sterilized by autoclaving at 120° C. for 15 minutes.

Example 15 Examination of Temperature Condition for First StepProcessing in Two-Step Midtemperature Processing of Algae

The culture medium obtained in Example 14 was centrifuged, andsterilized water was added to the precipitate to prepare a 40-foldconcentrate of the medium. The concentrate was adjusted to pH 4.5 with 3N HCl, and 500 μl of the concentrate was put into a 1.5 ml-volumeEppendorf tube, and preincubated with standing at 50, 52, 55, 57 or 60°C. for 5 minutes. Then, each sample was incubated at the sametemperature as the above temperature and 1000 rpm for 30 minutes, andthen incubated at 42° C. and 1000 rpm for 4 hours and 30 minutes or 9hours and 30 minutes to hydrolyze oils and fats. Each obtained samplewas centrifuged, and the amount of fatty acid in the precipitate wasmeasured. The measurement results are shown in FIG. 7. It was confirmedthat production of fatty acids was scarcely confirmed in the samplesobtained with induction at 50 or 52° C. for 30 minutes and thesubsequent incubation at 42° C. for 4 hours and 30 minutes as comparedwith the sample obtained with the continuous processing at 52° C.,whereas the production amount of fatty acids in the sample obtained withthe incubation at 42° C. for 9 hours and 30 minutes after the inductionexceeded that observed in the sample obtained with the continuousprocessing at 52° C. Further, when the sample was subjected to inductionat a temperature of 55° C. or higher for 30 minutes and then processedat 42° C., production of fatty acids was first confirmed after 4 hoursand 30 minutes, and the fatty acid production amount increased withdecrease of the induction temperature.

Example 16 Examination of Time for First Step Processing and Time forSecond Step Processing in Two-Step Mid-Temperature Processing of Algae

The culture medium obtained in Example 14 was centrifuged, andsterilized water was added to the precipitate to prepare a 40-foldconcentrate of the medium. The concentrate was adjusted to pH 4.5 with 3N HCl, and 600 μl of the concentrate was put into a 1.5 ml-volumeEppendorf tube, and preincubated with standing at 55° C. for 5 minutes.Then, each sample was incubated at 55° C. and 1000 rpm for 30 minutes,and then incubated at 42° C. and 1000 rpm for various times to hydrolyzeoils and fats. Each obtained sample was centrifuged, and the amount offatty acid in the precipitate was measured. The measurement results areshown in FIG. 8. With the induction at 55° C. for 10 minutes or 20minutes, the production amount of fatty acids increased after 4 hoursand 6 hours, respectively. On the other hand, with the induction at 55°C. for 30 minutes, the production amount of fatty acids increased after2 hours, and reached the maximum after 8 hours.

Example 17 Culture of Microalga Chlorella kessleri 11H Strain

The Chlorella kessleri 11H strain was cultured at 30° C. and a lightintensity of 7,000 lux (culture apparatus: CL-301, TOMY) for 7 days in800 mL of the 0.2×Gamborg's B5 medium (NIHON PHARMACEUTICAL) containedin a 1000 mL-volume medium bottle with blowing 400 mL/minute of a mixedgas of air and 3% CO₂ into the medium, and the resultant culture wasused as a preculture. As the light source, white light from afluorescent lamp was used. The preculture in a volume of 16 mL was addedto 800 mL of the 0.2×Gamborg's B5 medium contained in a 1000 mL-volumemedium bottle, and culture was performed at a culture temperature of 30°C. and a light intensity of 7,000 lux for 14 days with blowing 400mL/minute of a mixed gas of air and 3% CO₂ into the medium.

(0.2×Gamborg's B5 medium)

KNO₃ 500 mg/L MgSO₄•7H₂O 50 mg/L NaH₂PO₄•H₂O 30 mg/L CaCl₂•2H₂O 30 mg/L(NH₄)₂SO₄ 26.8 mg/L Na₂—EDTA 7.46 mg/L FeSO₄•7H₂O 5.56 mg/L MnSO₄•H₂O 2mg/L H₃BO₃ 0.6 mg/L ZnSO₄•7H₂O 0.4 mg/L KI 0.15 mg/L Na₂MoO₂•2H₂O 0.05mg/L CuSO₄•5H₂O 0.005 mg/L CoCl₂•6H₂O 0.005 mg/L

The medium was sterilized by autoclaving at 120° C. for 15 minutes.

Example 18 Examination of Solvent Used for Organic Solvent Treatment forFatty Acid Extraction

The culture medium obtained in Example 17 was centrifuged, andsterilized water was added to the precipitate to prepare a 40-foldconcentrate of the medium. The concentrate was adjusted to pH 4.5 with 3N HCl, and 600 μl of the concentrate was put into a 1.5 ml-volumeEppendorf tube, preincubated with standing at 55° C. for 5 minutes, andincubated at the same temperature and 1000 rpm for 30 minutes and at 42°C. and 1000 rpm for 12 hours to hydrolyze oils and fats. The obtainedsample in a volume of 250 μl was centrifuged, and the precipitate wasdried at 65° C. for 50 minutes in a centrifugal evaporator to prepare adried sample. To the dried sample or dried unprocessed sample, 500 μl ofeach solvent was added. Each sample was extracted at 45° C. and 1000 rpmfor 30 minutes, and fatty acid amount in each sample was measured. Themeasurement results are shown in FIG. 9. The fatty acid extractionefficiency was calculated as a relative value to the fatty acid amountobtained by centrifuging 25 μl of the mid-temperature-processed product,suspending the precipitate in 200 μl of 1% NaCl aqueous solution, andextracting fatty acids in a bead-type cell disruption tube containing400 μl each of methanol and chloroform, which was taken as 100. When thedried unprocessed sample was extracted with methanol, ethanol, acetoneor butanol, high fatty acid extraction efficiency was obtained. On theother hand, when the dried sample was extracted with each solvent, theextraction efficiency decreased. Moreover, with ethyl acetate, theextraction efficiency decreased for the dried sample and the driedunprocessed sample.

While the invention has been described in detail with reference topreferred embodiments thereof, it will be apparent to one skilled in theart that various changes can be made, and equivalents employed, withoutdeparting from the scope of the invention. Each of the aforementioneddocuments is incorporated by reference herein in its entirety.

1. A method for producing an L-amino acid, which comprises: (a)preparing a processed product of a microalga, which comprises a fattyacid and promotes production and accumulation of the L-amino acid by abacterium having an ability to produce the L-amino acid, by culturingthe microalga in a first medium, followed by processing at amid-temperature of 40° C. to 70° C., (b) culturing the bacterium in asecond medium comprising the processed product of the microalga toproduce and accumulate the L-amino acid in the second medium, and (c)collecting the L-amino acid from the second medium.
 2. The methodaccording to claim 1, wherein step (a) further comprises performingcentrifugation on the product of the processing at the mid-temperature,resulting in a precipitate comprising the fatty acid.
 3. The methodaccording to claim 1, wherein the processed product comprises an extractcomprising a fatty acid, obtained by subjecting the product of theprocessing at the mid-temperature to a treatment with an alkali or anorganic solvent.
 4. The method of according to claim 2, wherein theprecipitate obtained by centrifuging the product of the processing atthe mid-temperature is subjected to a treatment with an alkali or anorganic solvent.
 5. The method according to claim 3, wherein thetreatment with an alkali is performed at a pH of 10.5 or higher.
 6. Themethod according to claim 5, wherein the treatment with an alkali isperformed at 60° C. or higher.
 7. The method according to claim 3,wherein the organic solvent is selected from the group consisting ofmethanol, ethanol, acetone, 2-propanol, butanol, pentanol, hexanol,heptanol, octanol, chloroform, methyl acetate, ethyl acetate, dimethylether, diethyl ether, and hexane.
 8. The method according to claim 1,wherein temperature is lowered during the processing at themid-temperature.
 9. The method according to claim 1, wherein themicroalga is an alga belonging to the division Chlorophyta orHeterokontophyta.
 10. The method according to claim 9, wherein themicroalga is an alga belonging to the class Chlorophyceae,Trebouxiophyceae, or Bacillariophyceae.
 11. The method according toclaim 10, wherein the microalga is an alga belonging to the classChlorophyceae.
 12. The method according to claim 1, wherein thebacterium belongs to the family Enterobacteriaceae or a coryneformbacterium.
 13. The method according to claim 12, wherein the bacteriumbelonging to the family Enterobacteriaceae is Escherichia coli.